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51-1570-2

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 11528173 [Map]; Strand: c
      • AT1G32049.1 - [+] show detail
        Distance: 0; Region: exon1 (NonCoding)
      • AT1G32050.1 - [+] show detail - SCAMP family protein
        Distance: -272; Region: promoter
    Flanking Genome Sequence: 51-1570-2 - 5-prime edge 
    AACATGATGC TCGGAATCTC NAGCTACGTG TAAACTACTA TACTTGAGAG 
    ATCTGGTCCG TAAGATTTGC GTCCCCTGGA CGCTTAATCT CCACCATGCA 
    AATGACCTCT ACTAAAAAGA CATACATAAC AGCAAAGAAC CAAACAAGCC 
    ATAGAGGGGC AACGATGAGA GTGAAGATGG GAGAAACAAT GGAGATGAGC 
    ATGAGAGCTG CAAGAGCCCC NAAGAGATGG CTGATGTGTC CNACGAAGTG 
    GTGGATCGGA GCTTGGTTAC TATTGAGCTT TATTTCAGTG ACTCGGAGGA 
    CGA

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 11528289 [Map]; Strand: c
      • AT1G32050.1 - [+] show detail - SCAMP family protein
        Distance: -156; Region: promoter
    Flanking Genome Sequence: 51-1570-2 - 3-prime edge 
    ATCATGTTAA TGTATTAGTA GTAATTTATA GCATAAAATC ATGTGTTTTT 
    TCTTTCTAAG TTTTCGAACC CTAATCGTGT ATATAATAAA AGAATGAGTC 
    GGGCCTACTT TAAAGCCCGA AACAAATAAC CAAAACGGCC CATATACTTC 
    TTAGGGTTAG TTTCGTCAAA ATACCAATAN TTCCAAATTC CGCGTTTCGT 
    GTGGGAGAGA AAAAGAAGAA AAAGAGAGTC CAACCATATC AGTTTGCTTT 
    CACAGTGGAG TCGGTGCTCT CTCTTTTTTT CTTCTCTCTT TCTTTTCACC 
    TCTCGCCGGA TCTCGGCGAT CTTATAGGAG ACAAATCTAT CAGTATCGTT 
    ATTCTAGGGA TCTCTGACCA ACAATGAATC GCCACCACGA TCCCAATCCT 
    TTCCAT

AT1G32049.1

Model type
Pseudogene
Curator Summary
unknown pseudogene
Link
InterPro Scan - TAIR

AT1G32050.1

Model type
Protein coding
Short Description
SCAMP family protein
Computational Description
SCAMP family protein; FUNCTIONS IN: transmembrane transporter activity; INVOLVED IN: protein transport; LOCATED IN: mitochondrion, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: SCAMP (InterPro:IPR007273); BEST Arabidopsis thaliana protein match is: secretory carrier 3 (TAIR:AT1G61250.1); Has 679 Blast hits to 677 proteins in 107 species: Archae - 0; Bacteria - 0; Metazoa - 375; Fungi - 14; Plants - 225; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink).
Link
InterPro Scan - TAIR