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51-1794-2

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 18013789 [Map]; Strand: c
      • AT2G43360.1 - [+] show detail - Radical SAM superfamily protein
        Distance: -551; Region: promoter
      • AT2G43370.1 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: 51-1794-2 - 3-prime edge 
    CTCATCACAC TACGGAGGAN ACACTTCGAG AGGTTAATGA TTGAAATTTC 
    ACTTAGTTTT TGATTTTCGT GTANACTATG TTTTGAATAT GATTATAAAA 
    GTTTCTTCTT CGTANGTGAT GAGTAAGTAT GGCANGATTA NGAACTTGCG 
    CTTGGTNAGA CNCATCGGTA

AT2G43360.1

Model type
Protein coding
Short Description
Radical SAM superfamily protein
Curator Summary
Catalyzes the conversion of dethiobiotin to biotin.
Computational Description
BIOTIN AUXOTROPH 2 (BIO2); CONTAINS InterPro DOMAIN/s: Biotin/thiamin synthesis-associated protein (InterPro:IPR010722), Aldolase-type TIM barrel (InterPro:IPR013785), Elongator protein 3/MiaB/NifB (InterPro:IPR006638), Radical SAM (InterPro:IPR007197), Biotin synthase (InterPro:IPR002684); Has 5366 Blast hits to 5366 proteins in 2012 species: Archae - 191; Bacteria - 4453; Metazoa - 6; Fungi - 120; Plants - 75; Viruses - 0; Other Eukaryotes - 521 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G43370.1

Model type
Protein coding
Short Description
RNA-binding (RRM/RBD/RNP motifs) family protein
Computational Description
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: U1 small nuclear ribonucleoprotein-70K (TAIR:AT3G50670.1); Has 272 Blast hits to 272 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 270; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR