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51-2072-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 339083 [Map]; Strand: w
      • AT5G01880.1 - [+] show detail - RING/U-box superfamily protein
        Distance: 0; Region: exon1 (CDS)
      • AT5G01881.1 - [+] show detail - unknown protein; Has 3 Blast hits to 3 proteins in 2 species: Archae - 0; Bac...
        Distance: -755; Region: promoter
    Flanking Genome Sequence: 51-2072-1 - 3-prime edge 
    GCCGCAAGTA TGATCACCAT GTTTGCGTGC GAAGTTCATG TCCGGCGTGT 
    AGCATGTCCC CGGCCGCTGC CGGTGGTCGC GTTCCCACCA CCGGGGGACG 
    CCGGGGACAG TGGATGCAGC CGATGAGTCT CCGGGGTCAA TTGTGAGTTC 
    TTTTGAATTT GTGTTCG

AT5G01880.1

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Computational Description
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G10910.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G01881.1

Model type
Protein coding
Computational Description
unknown protein; Has 3 Blast hits to 3 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR