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51-2092-2

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30388314 [Map]; Strand: c
      • AT1G80850.1 - [+] show detail - DNA glycosylase superfamily protein
        Distance: -792; Region: promoter
      • AT1G80860.1 - [+] show detail - phospholipid N-methyltransferase
        Distance: 0; Region: intron2 (3UTR)
      • AT1G80860.2 - [+] show detail - phospholipid N-methyltransferase
        Distance: 0; Region: exon2 (3UTR)
    Flanking Genome Sequence: 51-2092-2 - 3-prime edge 
    TCGACCATTC TGTNNACTAC CGATAACCCG AGAANAGGTN NCTGCATTAT 
    CCATGAAAGT GTAGCATCAG TTTGAGTACA AAAGAGAATA CAAACTCATA 
    AAGAAAACAG TCAAGACCTG ACGTTCATGG GAGTTGAGCT CTTCTAAGAC 
    TAGTGGGTTA TGCTTAGGAA TCATGAGATG GATTTGGCNC GAGCATTTGG 
    ATCCTCCTTT GACTCGAGAA ACATCATGAA AACATAACCG AGAGACCAGA 
    GGAGAATGTA TTGAAATGGA ACCCAAGAGA GGCATGCCAA TAGAGACATG 
    ATACTCCCAA CATACTGTGG ATCTCTAATG ACT

AT1G80850.1

Model type
Protein coding
Short Description
DNA glycosylase superfamily protein
Computational Description
DNA glycosylase superfamily protein; FUNCTIONS IN: DNA-3-methyladenine glycosylase I activity, catalytic activity; INVOLVED IN: DNA repair, base-excision repair; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA glycosylase (InterPro:IPR011257), Methyladenine glycosylase (InterPro:IPR005019); BEST Arabidopsis thaliana protein match is: DNA glycosylase superfamily protein (TAIR:AT1G15970.1); Has 3667 Blast hits to 3667 proteins in 1573 species: Archae - 10; Bacteria - 3168; Metazoa - 4; Fungi - 0; Plants - 164; Viruses - 0; Other Eukaryotes - 321 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G80860.1

Model type
Protein coding
Short Description
phospholipid N-methyltransferase
Curator Summary
Encodes a single-copy phospholipid N-methyltransferase, involved in phosphatidylcholine biosynthesis. Has specific activity towards phosphatidylmonomethylethanolamine and phosphatidyldimethylethanolamine, but not phosphatidylethanolamine.
Computational Description
phospholipid N-methyltransferase (PLMT); CONTAINS InterPro DOMAIN/s: Phospholipid methyltransferase (InterPro:IPR007318); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G80860.2

Model type
Protein coding
Short Description
phospholipid N-methyltransferase
Curator Summary
Encodes a single-copy phospholipid N-methyltransferase, involved in phosphatidylcholine biosynthesis. Has specific activity towards phosphatidylmonomethylethanolamine and phosphatidyldimethylethanolamine, but not phosphatidylethanolamine.
Computational Description
phospholipid N-methyltransferase (PLMT); CONTAINS InterPro DOMAIN/s: Phospholipid methyltransferase (InterPro:IPR007318); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR