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51-2115-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 1585921 [Map]; Strand: c
      • AT4G03560.1 - [+] show detail - two-pore channel 1
        Distance: 0; Region: exon23 (3UTR)
      • AT4G03565.1 - [+] show detail - Cystatin/monellin superfamily protein
        Distance: -826; Region: promoter
    Flanking Genome Sequence: 51-2115-1 - 5-prime edge 
    ACTANTGATA GGTACTCTTG CAATNNCATG TTCTTTTGGA TTTTGTACTA 
    ATAAAAGTTA CATTTTAAAA GGTCAAGGTA AAACTCAGTA AACATTACAG 
    GAGTGTTAAA GAAATTGATG CTCATATAGT CATATAGTCA TCTGTTTTCA 
    TGACAAATTA TNNNTNTATC NTCTTATATT AAATCTTCAC CCAAAAGAAG 
    AAAAAATTTA GTCACCTTCT AGATTCTATT GAATCAAGAT TCATAGCATA 
    AAAGTATAAA CATGCTCTTA ACGGTCTATT TTTTTATGTG TCAGCAGAAG 
    TGGAACACTC TGGTTTGCTG AGTTCATCAC CCAACATGTG ATTATATATA 
    ATTTCTATCA T

AT4G03560.1

Model type
Protein coding
Short Description
two-pore channel 1
Curator Summary
Encodes a depolarization-activated Ca(2+) channel. Anti-sense experiments with this gene as well as Sucrose-H(+) symporters and complementation of yeast sucrose uptake mutant cch1 suggest that this protein mediates a voltage-activated Ca(2+ )influx. Mutants lack detectable SV channel activity suggesting TPC1 is essential component of the SV channel. Patch clamp analysis of loss of function mutation indicates TPC1 does not affect Ca2+ signaling in response to abiotic and biotic stress.
Computational Description
two-pore channel 1 (TPC1); FUNCTIONS IN: voltage-gated calcium channel activity, calcium channel activity; INVOLVED IN: regulation of jasmonic acid biosynthetic process, calcium ion transport, calcium-mediated signaling, seed germination, regulation of stomatal movement; LOCATED IN: vacuolar membrane, plasma membrane, vacuole, plant-type vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 2 (InterPro:IPR018249), Ion transport (InterPro:IPR005821), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G03565.1

Model type
Protein coding
Short Description
Cystatin/monellin superfamily protein
Computational Description
Cystatin/monellin superfamily protein; CONTAINS InterPro DOMAIN/s: Cystatin-related, plant (InterPro:IPR006525); BEST Arabidopsis thaliana protein match is: Cystatin/monellin superfamily protein (TAIR:AT5G17150.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR