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52-0002-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 23488122 [Map]; Strand: w
      • AT1G63310.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -1037; Region: intergenic
      • AT1G63320.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: 762; Region: intergenic
    Flanking Genome Sequence: 52-0002-1 - 5-prime edge 
    AAGATACTCT ACNNAGAAGC TTGTCGGCAA CAGAAATGAC AATGTACTTC 
    GACATAATCA ATTTACNATG CTAGAGAACC AAGTTGTGCC CTATAAAATG 
    GAAAGTACTA GCATGGAAGT AAGAATGAAA ATTTAGCAGC AGCGAGGCCT 
    TCATCAACTC GAATTAATGG AGTAGGAGAT ACGCTGGTCT CTGGAAGCAT 
    GAGCAATTTA CCATTCTTGA TGTGGGTCTA GAACTGAGCT TCTTTTTAAA 
    ACAAAAACCA CAATTATTTA CATCTATCAA ATTTTGTAAT TTGTGAGCTT 
    TCTTTATCTC CTACAAGACC ACCAAAACAG TTGTAACCAT GGTTCAATAC 
    GAGTTAAAAA GCTTTTGCAG TTCACAAGAA GTTCACCAAA AATTTCGTTT 
    TTTTTCAATA AATAAGCATT TGACATTACA ATGCCACATA TGAGGGGAGC 
    TTTGGG

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 24684241 [Map]; Strand: c
      • AT1G66235.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -367; Region: promoter
    Flanking Genome Sequence: 52-0002-1 - 3-prime edge 
    TTAAAGGTAC TTTCCTTTCT CCACCGAATT CTGAACAACA ATACATGTCA 
    TGTAAAGGTC TTGTTTAAAA GTTTTTCTGT GTAACAAAGA AATTTTCAAA 
    CGTTTGGCAT GTCATTATTT TGAGTCGTGT AACAATATTT TGATAATATT 
    TTGTGACGGA TCTACAAGCG TAAATCATCT CCTCTCTAAA ATGTAACACC 
    TCGATTTCAA TCTCGGACGG TAGCACTTTA ACACTCTTTT AACCACACTT 
    GGGGGTTCTT TTCAAAATGT TATTTCCACA CTTTTTTTGT TAGTATTCTT 
    TTCCCTAGTT GGCAAAAAAA GAAAGATATA AAACAAACAA AAGAACAATA 
    AAGACAGAGC CCTATATCCT CTTATATTGT CATGGTCGGT GCATGCTTCA 
    CTGTTCGCCG AACTATANCA AACAAGATAA GAACTCATGG TGTTAAGGTC 
    GGTTCACGAA TTACTATGC

AT1G63310.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G20362.1); Has 78 Blast hits to 77 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G63320.1

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR) superfamily protein
Computational Description
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G63080.1); Has 41413 Blast hits to 11056 proteins in 262 species: Archae - 6; Bacteria - 23; Metazoa - 203; Fungi - 327; Plants - 39906; Viruses - 0; Other Eukaryotes - 948 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G66235.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24380.1); Has 283 Blast hits to 282 proteins in 34 species: Archae - 0; Bacteria - 19; Metazoa - 15; Fungi - 0; Plants - 234; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).
Link
InterPro Scan - TAIR