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52-0009-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 24902700 [Map]; Strand: w
      • AT1G66760.1 - [+] show detail - MATE efflux family protein
        Distance: 0; Region: exon2 (CDS)
      • AT1G66760.2 - [+] show detail - MATE efflux family protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 52-0009-1 - 5-prime edge 
    GCTGGTGTGT ACTGTCTCTG GCTGGTACCA GCTTTATTCG GTTACTCTGT 
    TCTCGAGTCG TTGGTTCGAT ATTTTCAGTC ACAAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 24902596 [Map]; Strand: w
      • AT1G66760.1 - [+] show detail - MATE efflux family protein
        Distance: 0; Region: exon2 (CDS)
      • AT1G66760.2 - [+] show detail - MATE efflux family protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 52-0009-1 - 3-prime edge 
    ATTTAAAACG GTAGAGGTGT TAACTCTGCT ATTTGAGGAT CTTGATGAAG 
    CAACAGCAAG ATCTGGTTCA TGAACATCCA AAGAATCGAA ATCGGAACAG 
    AGATAATCAA AAGGAAAACT ATTGAAGTGA AAGTGTAAGA TCCAAGCT

AT1G66760.1

Model type
Protein coding
Short Description
MATE efflux family protein
Computational Description
MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: response to wounding; LOCATED IN: membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: MATE family transporter related protein (InterPro:IPR015521), Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT1G66780.1); Has 11372 Blast hits to 11171 proteins in 2068 species: Archae - 239; Bacteria - 8285; Metazoa - 148; Fungi - 331; Plants - 1323; Viruses - 0; Other Eukaryotes - 1046 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G66760.2

Model type
Protein coding
Short Description
MATE efflux family protein
Computational Description
MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: response to wounding; LOCATED IN: membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: MATE family transporter related protein (InterPro:IPR015521), Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT1G66780.1); Has 11176 Blast hits to 10988 proteins in 2036 species: Archae - 239; Bacteria - 8105; Metazoa - 148; Fungi - 328; Plants - 1324; Viruses - 0; Other Eukaryotes - 1032 (source: NCBI BLink).
Link
InterPro Scan - TAIR