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52-0013-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 446066 [Map]; Strand: w
      • AT5G02220.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: -3920; Region: intergenic
      • AT5G02230.1 - [+] show detail - Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
        Distance: -2039; Region: intergenic
    Flanking Genome Sequence: 52-0013-1 - 5-prime edge 
    GTNAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCGAA CAGGCTGCGT GCATGCAATG CAACATTGAA 
    TCGAGCTGGC CCATCATTAT TTTTTCATTT TTTCTATAAC CAAAAATTTC 
    TAAAATAAAT ATAACTAATT TCCTAGGTAT ATGAATGAAA GAGTCGATTC 
    CCCCACCCAA AATCATCATT CAAAAACAAT TATTAAATCT TTTTTGAGTA 
    AATTGTTTTT AACGAATTTG TGGTCTTCCA ATCGTTGAAA AAATTATCAT 
    ATGAGTAGAA CTGTATTGTC ATTGCACTGC GATTAGTTTT TTTTTTTTTT 
    NGNAAAANNA ANNNTTAAAA NNTTNGGGGN NCNNNNNNCC NNNNCNTTTA 
    NGGGNANNNC CNCCCNGGGN CNGNANCCCC NGGGGNCCNT NTAAAAA

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 446067 [Map]; Strand: w
      • AT5G02220.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: -3921; Region: intergenic
      • AT5G02230.1 - [+] show detail - Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
        Distance: -2038; Region: intergenic
    Flanking Genome Sequence: 52-0013-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCG 
    CCCTTGAAGC TTCCCACTTG TTGAAGCTTC CACTTATGTC TATGAACCCT 
    CCACTTGTAG CACGAATTCC TTGAAGATGC CACGCGAAAC ACGAGCATGA 
    TCAAATTTTC TTTAGTATAA TTTTCATTTT TCAATGATTT TGTATTAATT 
    TTTAATATTT AATTACCCTG ATTAGCTACC TATCAATCAC CACTGGTTAT 
    TAGAATAGAA AAAGGTGAAA TGCATATCGT TGACAATTGA AATGTGAACA 
    TATGATGGTG ATATATTTAG TATTTAATGA CATGTGCATC ATGCATCCAT 
    TTTCCATATT ATAAGCTGTT TATTTATTTC TGCCGTCCAT ACCGGTAACT 
    TTAATTCGTA ATTTATGCTT ATAGTTAAAA CTTTTGAGTA TGAAAAGAGT 
    ACAAACCCAT ATGGGTACTG CGACAAAATT TAATTTGGTT AGATTAAAGT 
    GTTCACGGAT AGATC

AT5G02220.1

Model type
Protein coding
Computational Description
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G02230.1

Model type
Protein coding
Short Description
Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
Computational Description
Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; FUNCTIONS IN: hydrolase activity, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), Pyrimidine 5-nucleotidase (InterPro:IPR010237), HAD-superfamily hydrolase, subfamily IA, variant 3 (InterPro:IPR006402); BEST Arabidopsis thaliana protein match is: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (TAIR:AT5G59480.1); Has 2249 Blast hits to 2246 proteins in 493 species: Archae - 16; Bacteria - 743; Metazoa - 0; Fungi - 143; Plants - 201; Viruses - 0; Other Eukaryotes - 1146 (source: NCBI BLink).
Link
InterPro Scan - TAIR