1. Home
  2. Mutant Lines
  3. 52-0014-1

52-0014-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 5185831 [Map]; Strand: w
      • AT5G15870.1 - [+] show detail - glycosyl hydrolase family 81 protein
        Distance: -953; Region: promoter
      • AT5G15880.1 - [+] show detail - unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae ...
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 52-0014-1 - 5-prime edge 
    GAGACGGAGA AGGANAAGAA NAAGAGATAT GGCCGGACTT CTAGCTTGGG 
    CTGCCGATGT CGTCGGTAAA AATGGAAAAG AAGGAGACGA TGAGAAGGAT 
    CGGATCCCAT TGGTTTTCAC GGAGGAGCAG CAGAAATACG TCGATGAGCT 
    TGGCCGAAAA GCGACAAACC TCAGCCGTTC GATCCAAGAT CTGCGGCTCA 
    GATTGCCTCC ACCGGATATC TCCCAGCGTC TACCTGACCT TCATGCTCAC 
    TCCCTTGCGT CCAATGCCGC CCTCACTCTT CAGCTTGATT CGCACTCCGC 
    TACTCGTGAA CAGGTTTGAG TTATTGAAAT ACTATAGCTG ATTTGGGAAT 
    TGTGTTTTTG CGTTATAGGA TTAGTCTTCA ATTGATATGG CTTTGGCTGA 
    TGTTGATGTG ATCCTAATGG TTCTTCTT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 5185764 [Map]; Strand: w
      • AT5G15870.1 - [+] show detail - glycosyl hydrolase family 81 protein
        Distance: -886; Region: promoter
      • AT5G15880.1 - [+] show detail - unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae ...
        Distance: -14; Region: promoter
    Flanking Genome Sequence: 52-0014-1 - 3-prime edge 
    TTTAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCGA 
    CCGTCTCCGT CTCTTTGATG TGACTCGCGG GACGATGGCA GAGCTAAACC 
    GAAGCGGTTG GTGGTTGAAC CGGCACGATT CGGTTATGTT AGTTGAATT

AT5G15870.1

Model type
Protein coding
Short Description
glycosyl hydrolase family 81 protein
Computational Description
glycosyl hydrolase family 81 protein; FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, endo-1,3(4)-beta-glucanase activity; INVOLVED IN: response to cyclopentenone; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 81 (InterPro:IPR005200); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 81 protein (TAIR:AT1G18310.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G15880.1

Model type
Protein coding
Computational Description
unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR