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52-0015-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 8250572 [Map]; Strand: w
      • AT5G24270.2 - [+] show detail - Calcium-binding EF-hand family protein
        Distance: -7215; Region: intergenic
      • AT5G24280.1 - [+] show detail - gamma-irradiation and mitomycin c induced 1
        Distance: 806; Region: intergenic
    Flanking Genome Sequence: 52-0015-1 - 3-prime edge 
    TCAATCTACA TAGATTCTGT TTTTTCTTTG TTCTCACAAA TATTCGACCC 
    TTTTTCTAAG TGTGGTGGTG TCTATATGTA ACTTTGAGTT ACTTGCCTTT 
    ATAAGACACC AAACAATTGT TTACACACAA TTAGTAAAAA AAAAACGTCC 
    AATGAAATGT NTAAAACTTG TNTCGGNGTA TGTCATTCAC AATTCTTGTT 
    TTTAAATCAA TCATNTGCAA CTGAAANAAA GTTTGTAACA ATGTCCCTGT 
    NGTATTATGA GTATGTTTTT GTAGCTTCTC TTCTAAATCA TGTCTTTTGA 
    ATTTCANATG AGTAAAAANA NATCGGCTCA AANAGTNTTG AGTCTNTNTG 
    ATGATGAANA TAAGTTTTAC AGGCTCAANA TTNTTTTACC AAACAGCNCA 
    AGNGNGACAC TTGCNCTTAC TAACCCTGAA CCTAAAATGT CAATGAANAA 
    TTTTGTTAAC TTGGNGAAAG AGGAATNTGA NAAAACCAGG AAANATTGNG 
    TNTTGTCCGG TAANATGAGG AAGCNAATTG ATTGGAATTT GGCTGCTATN 
    TCTTATNTCG AGTTTAACGG NGAAAAGATT AAANACATCG TTCGATTCGA 
    GAAGTTTAAG CCCGATTTGN GCAATATAAT ACGTCTTGAC GTGAGTNGGT 
    TTTTAATCTA TTCCTTATGC TACTTGCTCT ATTTTTTATG NGGTGGATNT 
    AACTAACT

AT5G24270.2

Model type
Protein coding
Short Description
Calcium-binding EF-hand family protein
Curator Summary
encodes a calcium sensor that is essential for K+ nutrition, K+/Na+ selectivity, and salt tolerance. The protein is similar to calcineurin B. Lines carrying recessive mutations are hypersensitive to Na+ and Li+ stresses and is unable to grow in low K+. The growth defect is rescued by extracellular calcium.
Computational Description
SALT OVERLY SENSITIVE 3 (SOS3); CONTAINS InterPro DOMAIN/s: Recoverin (InterPro:IPR001125), EF-HAND 2 (InterPro:IPR018249), Calcineurin B protein (InterPro:IPR015757), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048); BEST Arabidopsis thaliana protein match is: calcineurin B-like protein 8 (TAIR:AT1G64480.1).
Link
InterPro Scan - TAIR

AT5G24280.1

Model type
Protein coding
Short Description
gamma-irradiation and mitomycin c induced 1
Computational Description
GAMMA-IRRADIATION AND MITOMYCIN C INDUCED 1 (GMI1); BEST Arabidopsis thaliana protein match is: defective in meristem silencing 3 (TAIR:AT3G49250.1); Has 114 Blast hits to 102 proteins in 24 species: Archae - 0; Bacteria - 7; Metazoa - 8; Fungi - 4; Plants - 91; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Link
InterPro Scan - TAIR