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52-0019-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 8095104 [Map]; Strand: c
      • AT5G23960.1 - [+] show detail - terpene synthase 21
        Distance: 0; Region: exon7 (CDS)
      • AT5G23960.2 - [+] show detail - terpene synthase 21
        Distance: 0; Region: exon7 (CDS)
    Flanking Genome Sequence: 52-0019-1 - 5-prime edge
    CNACCTNCGT AGAAGTGAAT CAATTCCATG GATTGGGATA GTCATTCTCA 
    AATGGGTATA GTTTCAATGA GCAAAGAAAC AATGTGCTCC TTCAAGAGCT
    TGGGGTTGGT GTAAGCATCT TGGTACCTAT AGAATACATC GATGACTCNC
    GAAAGGTTAA GAACTCGCAT CAAAAGAGGG AAAGGAAACA CGTGAGGCCT
    CATTAGCTCT TGGTTCAAGT CCTTCCATGC ATCTGAAACA ATGTTTCCCA
    TCACTTCCAC AGCTCTTTCC TTGGAAACAC CAAATTGCTG CATATAACAA
    TCAATGCCAG TCGCTACATG CTCCCGTTTG TGTTCAAACT GCAATTACAA
    ATACCANATG TATTCAACTT GAGAAATACG TATATATAGT ACTANGACTC
  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 8095220 [Map]; Strand: c
      • AT5G23960.1 - [+] show detail - terpene synthase 21
        Distance: 0; Region: exon7 (3UTR)
      • AT5G23960.2 - [+] show detail - terpene synthase 21
        Distance: 0; Region: exon7 (3UTR)
    Flanking Genome Sequence: 52-0019-1 - 3-prime edge
    GATGGTTGGA TAGTTATTTT ATTTATGTTG TATGTTTATT TGTATTCTGG 
    TAGTTACTTT TTTTTTTGGG NANNATGGTT GGGGACCTTT NGTGGGGAAA
    CCCNGGGGAN GNNGNAACCC NNANTNAAAA NCTNGGGGTN GTTTTANCGG
    GNATNTTNGG NNTNGTAAAN CAANCANCTN TCAAATCAAA AAAAAAGNAA
    NGGNCTTTNA AATTTNGGGN NNAANATAAG GGTTTNTTNA ANCCNCCCCT
    TNNCAAANGN CNNCNCCNNA NNTTNNTCCN CAANNCNTCA AATNAANCGT
    TTNAAAANNC TNNCCNANTT CNCCCCGGGG NTNNCNCNTN NTNANCGNCG
    NCCNTNNCAA ATNTTNANTT NGGNNCTTNA ANNCGGGGTT AAAGNCGGNA
    CCCTNCCGTT NNTNTNTNAA NGNCGNNTTN TTNTTNAANC GGCCNGGCCC
    NCCCNGGNCT GNNANTGGGN CCCANTNCCC CTNNAACCCC NTNNAANNCG
    GNTNANNCCA AAGGGGCCCN ANNCCNNCTT CCANATTTGN CCCCCCAAGT
    CCNCAAAGGN ATCCANTNNG GGGACTTTAA AAANTCCNAA NCNTNTTNNC
    CCANAANNCN CGGNTCGTNN CCTCNAAAAC NAATTCCTCA CCGTAAAAAA
    GGAACCTGAA TCGCNCAATN NCCGAAACTT CCCTCAAAAA AAGGGGAACN
    CTNCNAAANC CTAGGGNTTA AANTTTCCCC NCTCNTCCCG TTTTA

AT5G23960.1

Model type
Protein coding
Short Description
terpene synthase 21
Curator Summary
Encodes a sesquiterpene synthase involved in generating all of the group A sesquiterpenes found in the Arabidopsis floral volatile blend. Strongly expressed in the stigma.
Computational Description
terpene synthase 21 (TPS21); CONTAINS InterPro DOMAIN/s: Terpene synthase, metal-binding domain (InterPro:IPR005630), Terpenoid synthase (InterPro:IPR008949), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Terpene synthase-like (InterPro:IPR001906); BEST Arabidopsis thaliana protein match is: Terpenoid cyclases/Protein prenyltransferases superfamily protein (TAIR:AT3G14490.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G23960.2

Model type
Protein coding
Short Description
terpene synthase 21
Curator Summary
Encodes a sesquiterpene synthase involved in generating all of the group A sesquiterpenes found in the Arabidopsis floral volatile blend. Strongly expressed in the stigma.
Computational Description
terpene synthase 21 (TPS21); CONTAINS InterPro DOMAIN/s: Terpene synthase, metal-binding domain (InterPro:IPR005630), Terpenoid synthase (InterPro:IPR008949), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Terpene synthase-like (InterPro:IPR001906); BEST Arabidopsis thaliana protein match is: Terpenoid cyclases/Protein prenyltransferases superfamily protein (TAIR:AT3G14490.1).
Link
InterPro Scan - TAIR