1. Home
  2. Mutant Lines
  3. 52-0028-1

52-0028-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23042050 [Map]; Strand: c
      • AT3G62260.2 - [+] show detail - Protein phosphatase 2C family protein
        Distance: -1480; Region: intergenic
      • AT3G62270.1 - [+] show detail - HCO3- transporter family
        Distance: 234; Region: intergenic
    Flanking Genome Sequence: 52-0028-1 - 5-prime edge 
    GTGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCA CTAATATAAT GTTTTAAAGA TCCTTCGCAG 
    AATTTAAATA CAAAAAAGGG CTAAAAGTTG CACCTTTTTC TTATTAATAT 
    TATAGTCGAA ATCTTAAGGC CAACTATTCC CTTAAAATCC AACAAGGAAG 
    AAAACCTTAC NTGAATCCAA TGGGCTTAAT ACTTTCAGAC AGTTTAAAGA 
    TTTATGGCTT TCCTCGAAAT TATGATCCAT TAAATGCGTG TCTCCTCATT 
    GATGATCATC AGCAAATCGT GTGTCATATT ATATTAACCC TAATCATAAT 
    ATATTAATAC TATAACACCA GCAACATTAT GCTGAGTCAT ACATATATAT 
    GCTAATAAGT ACTAGTAGTT GTTAATTTTT ATTGGTAAGA TACCATAACA 
    CTAGTTTTAT ATTAGACTTT ACACGAACAA GTTTCAAAAT TTTAGCAACG 
    CATTAGATCT TGAGCATCTT GGTTTCGTCT AAAGAAACAT TATTTAGTTG 
    AATGTCTTAC ATAGTAAGAC AAATATTTTT GGGTAATATA TAAAAAATGT 
    GATAATTTTT AACTTTTAAA TTAGCATTTA GGTTAAATTA GATCATACAT 
    TCTTAATATG ATAACAAAGT GTATTACCGC CTTAATAGAC AGTTTTTTTA 
    TAAGAATGGT TTTGCACCTA CTCTATACAA ATAACATGTC TTATTATATT 
    TTCGAAATGT TAAACTTACT CATATTGCTT ANGACAAAT

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23042066 [Map]; Strand: c
      • AT3G62260.2 - [+] show detail - Protein phosphatase 2C family protein
        Distance: -1496; Region: intergenic
      • AT3G62270.1 - [+] show detail - HCO3- transporter family
        Distance: 218; Region: intergenic
    Flanking Genome Sequence: 52-0028-1 - 3-prime edge 
    GAAAACGGTA GAGGTATTTT ACCGACCGTT ACCGACCGTT TTCAGACAAT 
    GGTTTTAATC AGGTTAAGTT ACTGTACCTA CGCGTGGAAA AATGGTCAAT 
    GAGAATGTCT TAATCTAATC TCTGATCCGA CAATAAAAAT CGAGACGCAA 
    CAAACACAGT TTAAGACAAC CACATAACCA AAAGGCAAAA GCCACTAACN 
    TTTTCTTGTT GTTCTTTATT TTCATGTTTC CGTTAGATTT TTTCTCTCGA 
    ACTTTCTTTT ATCGTGAACG TCTATATTAT AAGCTGATGT TTCATGGCTT 
    TATTATTACA TAGTATAATG TTTTACCGAC ATTTGACATG GTATTTAGAG 
    AGATTTTACA ATGATTCTAA ATCAAGAACA GAAATGCAAA CATAATTTTA 
    AACATAGGTA AAAAGAAAAA AAAANCTCAA NAATGCNTAA AATNCANCAT 
    CAATTAATTA ACTAATTTTA AACATAATCT CCTCCGGTTT TATCAANCCT 
    CCNTCATCGG TAAACTCATT TCNACNATNA TNATGGGTTT AAAGGACTCG 
    GNTTTGNACT NTTTTGGCCT TTCCCGGAAA GCCTTGGACT CATNTNACCT 
    NTTAAATCAA TCACTNTAGG ACTAAACACT TGAAANANAT TCCNATTNTA 
    AACCGGGGTT GAAGTCGAAC TANTAACTTT AGGACTACAT GTGNGTCTAA 
    ACTCTCCTCT GCTTCTTGTA ATAAACTCAT CAANAATCTC AAAATCNCAT 
    GGATACNAAG CAGTTGATCC CATCTCAGCT TCCT

AT3G62260.2

Model type
Protein coding
Short Description
Protein phosphatase 2C family protein
Computational Description
Protein phosphatase 2C family protein; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: protein amino acid dephosphorylation; LOCATED IN: protein serine/threonine phosphatase complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C, manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: Protein phosphatase 2C family protein (TAIR:AT1G48040.1); Has 7565 Blast hits to 7530 proteins in 876 species: Archae - 12; Bacteria - 1215; Metazoa - 1621; Fungi - 781; Plants - 2594; Viruses - 9; Other Eukaryotes - 1333 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G62270.1

Model type
Protein coding
Short Description
HCO3- transporter family
Computational Description
HCO3- transporter family; FUNCTIONS IN: anion exchanger activity; INVOLVED IN: anion transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bicarbonate transporter, eukaryotic (InterPro:IPR003020), Bicarbonate transporter, C-terminal (InterPro:IPR011531); BEST Arabidopsis thaliana protein match is: HCO3- transporter family (TAIR:AT2G47160.1); Has 2572 Blast hits to 1412 proteins in 199 species: Archae - 0; Bacteria - 14; Metazoa - 1904; Fungi - 316; Plants - 231; Viruses - 2; Other Eukaryotes - 105 (source: NCBI BLink).
Link
InterPro Scan - TAIR