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52-0035-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22396703 [Map]; Strand: c
      • AT3G60580.1 - [+] show detail - C2H2-like zinc finger protein
        Distance: 1659; Region: intergenic
      • AT3G60590.3 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -1525; Region: intergenic
    Flanking Genome Sequence: 52-0035-1 - 5-prime edge 
    GTTGAGAGAT AACGGTGGTT GTCTTTAGTG AGTCATTATT AGAGGTTTCT 
    TTTTTCATTA AATCAAACAA ACTGAAGTTA GGAAAATCAA ACAAAAAAAG 
    GAGCAGTCGA AAACATTTAA CTAGAAAAAT AAAATTAAAT GAAGAAGACT 
    TGAAGCTGAA ACTGGTGCAT TGAGTCAGAG AGACACTTTA ATCACGCCCC 
    AACCAAACAT CTTTTCGTTG TGCTTCTCTG CTAC

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22396773 [Map]; Strand: c
      • AT3G60580.1 - [+] show detail - C2H2-like zinc finger protein
        Distance: 1729; Region: intergenic
      • AT3G60590.3 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -1455; Region: intergenic
    Flanking Genome Sequence: 52-0035-1 - 3-prime edge 
    ATTTAAAACG GTNGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCT 
    CAACAAGTCA ACATAGAAAA AGTTTCAATA CAAGATTCTA TTTGGAAAAC 
    CAACTCGTTT GTTAGAAATT TACATTAGTT ATCGAGAACA AATGTATATA 
    TATATATATA TATTNATNTG AAAAAGAAAA AAAAAAAAAA NNGGGGNCCC 
    CCCCCNNNNG GGGGNAANCC CCCCCCCNGG GNCNNNCCCC CCCNGGNNCN 
    TNNNAANTNN NNNNNNNANN NNNGGGNNNN CTCNTGNGGC NNNNNNGGGG 
    GGGGGGGGGN GNGNNCNCCC NCNCNNNCNN NGNGGNNCNC NNGNNNNATN 
    NNNNC

AT3G60580.1

Model type
Protein coding
Short Description
C2H2-like zinc finger protein
Computational Description
C2H2-like zinc finger protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: C2H2-like zinc finger protein (TAIR:AT2G45120.1); Has 2639 Blast hits to 2349 proteins in 138 species: Archae - 0; Bacteria - 0; Metazoa - 1624; Fungi - 13; Plants - 935; Viruses - 0; Other Eukaryotes - 67 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G60590.3

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G48460.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR