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52-0044-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 9524110 [Map]; Strand: c
      • AT4G16920.1 - [+] show detail - Disease resistance protein (TIR-NBS-LRR class) family
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 52-0044-1 - 5-prime edge 
    CTTACAATGT TGGTTGAGAA GTCCCTCATA CGTATTACAC CGGATGGAGA 
    TATAGAGATG CACAATTTGC TAGAGAAATT GGGTAGAGAA ATTGATCGTG 
    CAAAGTCCAA GGGTAATCCT GGAAAACGTC AATTTCTGAC GAATTTTGAG 
    GATATTCAAG AAGTATTGAC CGAGAAAACT GTAAGTTTTT CGCATCTCCT 
    AAACGTTGTA ATGCATGACG TTATTTATGA GATGGGTTTT TATGATTAGA 
    GTCCCGCAAT TATACATTTA ATACGCGATA GAAAACAAAA TATAGCGCGC 
    AAACTAGGAT AAATTATCGC GCGCGGTGTC ATCTATGCTA CT

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 9524226 [Map]; Strand: c
      • AT4G16920.1 - [+] show detail - Disease resistance protein (TIR-NBS-LRR class) family
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 52-0044-1 - 3-prime edge 
    ATTGTAAGCC CAACATCATC TTCAAGTAAT TCTTTGACGT TACTGAGTTT 
    AAAACCATTG AAGAAACATG CAATGCACTT AAATAACTCT CTATTTTTTT 
    TATTTAACCT ATCGTAGCAG ACTCTTAGTG TTTCCTCAAT TTTATCATCT 
    GAGTCATTTC GAAGCCTAGG CATCATCTTC ACCCACTCAT CTTTGTCCCT 
    TCCTTTTAAA GATGAACCCA AGACACTGAG ACCCAAAGGA AGATTACCGG 
    CAAGCTCGAC AACTTCAACT GCGAGCTCCC TATAATCATC AGGTGGGGAG 
    TCTTTCCCAA AAGCAGATCG GCATATCATC TTAAGAGCAA GACCTTGAGA 
    TGGCAGCTCC ACCTCATATA CAAGGTCAAT CTCATGAGCC TTGAGAAGTT 
    GCCTATCTTG AGTGATCACA ATAATTCTGC TTCCAGATCC AA

AT4G16920.1

Model type
Protein coding
Short Description
Disease resistance protein (TIR-NBS-LRR class) family
Computational Description
Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, apoptosis, defense response, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT4G16950.2); Has 33072 Blast hits to 18315 proteins in 784 species: Archae - 24; Bacteria - 2125; Metazoa - 2462; Fungi - 169; Plants - 26873; Viruses - 34; Other Eukaryotes - 1385 (source: NCBI BLink).
Link
InterPro Scan - TAIR