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52-0055-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30133448 [Map]; Strand: w
      • AT1G80100.1 - [+] show detail - histidine phosphotransfer protein 6
        Distance: -278; Region: promoter
      • AT1G80100.2 - [+] show detail - histidine phosphotransfer protein 6
        Distance: -278; Region: promoter
    Flanking Genome Sequence: 52-0055-1 - 5-prime edge
    GCGGGAAGGG TGACCAGCTG GTCTGACAGG GTACGCCGGT TGTCGGGAGG 
    AAGAACGCCG CTATTGGCAG AGTCACGCGG GGTAACCGGC TGGCGGCTGT
    AGCCGGTCAC AGAGTGTATT AATATGGTCG TACAATACTT GTAGAGTGCT
    TTTTCCTGTG ACGGTCCCGT TTATTCCCCA CACCCTCCTC GATTCTTTCA
    CTTAAAAGTG GGGGAAAAAG GTAACCTGAC TCTTAGAAAA TTTGAATACA
    ATTGTGGGTC ACCTCATCTC ATGTAGTCAT GTCTATACAA TTATAAATAC
    CTCTCAACAA ACCCAAAATC GAATTATAAG CCTTCTCTAG CTAGAGTTTG
    AAGCAAGACC TGTTCACATT AGTAAAAACA AATATATAGA AAGAGGAAAG
    ATTGAAGCGG AAAACGGGAC AAGACGGGTG TGCCGTTGTG GATGTTGGGG
    TTTGGGTGTG GACCGGCTTC AAGCCGACAT CAACCGGCTC CTAGCCTCTC
    TTTTCCACCA GGGAGTGCTG GACGAGCAGT TCTTGCAGCT TCAGCAGCTT
    CAAGATGAGA CTTCACCAAA CTTTGTGTAT GATGTCATTA ATATCTACTT
    TGATGAATCC GAGAAGTTAC TCCGCAACCT TAGATTATTG TTGTGAGTTT
    CTTTCTTTGT TAATGTGTTC CATAGTTGTA TGTTGTTTGG TTCCAAAATG
    TATACGTATA TATATGAT
  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30133332 [Map]; Strand: w
      • AT1G80100.1 - [+] show detail - histidine phosphotransfer protein 6
        Distance: -394; Region: promoter
      • AT1G80100.2 - [+] show detail - histidine phosphotransfer protein 6
        Distance: -394; Region: promoter
    Flanking Genome Sequence: 52-0055-1 - 3-prime edge
    CTTCCCGCAG CCTCTACATT TACATATTTA ACTTAATACA TCTGCCTTAA 
    ATTAAATCAA CAACTTTTAC ACCAATAATA TGTACTTTCT ATCTTTAATT
    TCTCACTGTT GAAATTAATC TCTTTTCTTT TATCAGGTCT GATTAAGATG
    ATTATTTGGT CTGTCAAGTT ATAATCATAT AACAGTAATG TACATTAGAT
    TATCTCATAA TTAATCCACT CTTGATTTAA CACAAGAATT GT

AT1G80100.1

Model type
Protein coding
Short Description
histidine phosphotransfer protein 6
Curator Summary
AHP6 lacks the conserved histidine residue (Asn83 in AHP6b), which is required for phosphotransfer, present in the other AHPs. AHP6 does not appear to have phosphotransfer activity. Acts as an inhibitor of cytokinin signaling by interacting with the phosphorelay machinery. Expressed in developing protoxylem and associated pericycle cell files. Negative regulator of cytokinin signaling. Expression is down-regulated by cytokinins. There are two alternatively spliced genes for this locus, AHP6a and AHP6b, differing in the length of the first exon. In ahp6-2 seedlings, only the AHP6a transcript is present. Members of the AHP gene family include: AT3G21510 (AHP1), AT3G29350 (AHP2), AT5G39340 (AHP3), AT3G16360 (AHP4), AT1G03430 (AHP5) and AT1G80100 (AHP6).
Computational Description
histidine phosphotransfer protein 6 (HP6); CONTAINS InterPro DOMAIN/s: Signal transduction histidine kinase, phosphotransfer (Hpt) domain (InterPro:IPR008207); BEST Arabidopsis thaliana protein match is: histidine-containing phosphotransfer factor 5 (TAIR:AT1G03430.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G80100.2

Model type
Protein coding
Short Description
histidine phosphotransfer protein 6
Curator Summary
AHP6 lacks the conserved histidine residue (Asn83 in AHP6b), which is required for phosphotransfer, present in the other AHPs. AHP6 does not appear to have phosphotransfer activity. Acts as an inhibitor of cytokinin signaling by interacting with the phosphorelay machinery. Expressed in developing protoxylem and associated pericycle cell files. Negative regulator of cytokinin signaling. Expression is down-regulated by cytokinins. There are two alternatively spliced genes for this locus, AHP6a and AHP6b, differing in the length of the first exon. In ahp6-2 seedlings, only the AHP6a transcript is present. Members of the AHP gene family include: AT3G21510 (AHP1), AT3G29350 (AHP2), AT5G39340 (AHP3), AT3G16360 (AHP4), AT1G03430 (AHP5) and AT1G80100 (AHP6).
Computational Description
histidine phosphotransfer protein 6 (HP6); CONTAINS InterPro DOMAIN/s: Signal transduction histidine kinase, phosphotransfer (Hpt) domain (InterPro:IPR008207); BEST Arabidopsis thaliana protein match is: histidine-containing phosphotransfer factor 5 (TAIR:AT1G03430.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR