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52-0057-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 14792472 [Map]; Strand: c
      • AT4G30200.4 - [+] show detail - vernalization5/VIN3-like
        Distance: -1971; Region: intergenic
      • AT4G30210.1 - [+] show detail - P450 reductase 2
        Distance: -4292; Region: intergenic
    Flanking Genome Sequence: 52-0057-1 - 5-prime edge 
    GTAATGCCAT CACAATTCAC AACCCCTTTA GGGACCACAT GAGATGATAA 
    CATTAAAATT GTTATAGTTT AATATTCTTT TTTATATATA TGGTATGTTG 
    CCACTTGCCA GTCCACATTA TTCAATACTT CCACCATTAA GTCTAACAGT 
    TTTTTTTGCA TACATATATA GGATTCTTTG TCAAATACAG CTCGTAACAA 
    TGTACCATGC ACGACTTCCG CATAAAAAAT ATTCATTCAA TCATCCCCAC 
    CAATACAGAT GATGGTGTTA CATATATTCA TTTATGTAAA ATTTATTATC 
    ATCAAAGTAA GACCTATTTC GATCGTATAT TTCGCACTAC TACATAATGC 
    TTTGGATGTA AAGTAGCCAA AAATGGTTGT TACNACTTAC GACTGTGCAC 
    ACCGAACATA AAAAAATTGA TCTAAAATTC TTGGACGCTT TGATTTTGGC 
    TACACCGATT AAACATGTCA ATGAAAAGTC AACGGGATTT TTGGCTTACA 
    CGTACGTAGG ATCAAACAAT TTTTTAGACA TAACATATTT GTCATTATTT 
    TGAATCTTAA GAGCTGTTAA TTTGAAAAAT TATAAACCTC ACTTTTTCAA 
    TATAAACATG TATGTTATCC GTACTAATAT TAGCTAGCTT TTACTATGGC 
    ATAGCTATAG ATGATTGCTA ACTAGGTTAG GTGGAGATTC AATACCACCA 
    AATTAAATGA TNCG

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 14792588 [Map]; Strand: c
      • AT4G30200.4 - [+] show detail - vernalization5/VIN3-like
        Distance: -2087; Region: intergenic
      • AT4G30210.1 - [+] show detail - P450 reductase 2
        Distance: -4176; Region: intergenic
    Flanking Genome Sequence: 52-0057-1 - 3-prime edge 
    NGCNTTACCA NCNNAAAAAN AAAAACAAAT CATGAATCAT TGCATGGGGT 
    AAGTACNAAA AGTGTGATAA AAAAATCTCA TTCACATATA TTTCATAATA 
    TTCTGTCTTT GAGCAAACTA TATAACANTA GTTTCAAGAA ATAAANCAAT 
    GNTCNTGAAN ANTATTTATT TTACTTTTCG AGGGACTATG GATGATGAGA 
    TCAANAACTC ANAATGCTAA TNAAGTTTGT AAAAACAAAT ANNAAAGATC 
    AAATTTGGTC ATGCCATAGC CCTTTTTAGA CTCGTCAAAA CATGTCATTT 
    TATTTTATTT TGTATTTCGT GGTTAGTTGC AGATTAAACA AGGTTGCAAA 
    AAGTAGTGAA TATAGTCTAG TGGTTTCGTC ATATCGAANT CNGGGAAGTG 
    TGAAATTGTT TCTAGTGGAT ACGCACACCT GACTTAATTA TTATATAT

AT4G30200.4

Model type
Protein coding
Short Description
vernalization5/VIN3-like
Curator Summary
Encodes a protein with similarity to VRN5 and VIN3.Contains both a fibronectin III and PHD finger domain. VEL1 is a part of a polycomb repressive complex (PRC2) that is involved in epigenetic silencing of the FLC flowering locus.
Computational Description
vernalization5/VIN3-like (VEL1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: vegetative to reproductive phase transition of meristem; LOCATED IN: PcG protein complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1423, plant (InterPro:IPR004082), Fibronectin, type III-like fold (InterPro:IPR008957), Fibronectin, type III (InterPro:IPR003961); BEST Arabidopsis thaliana protein match is: Fibronectin type III domain-containing protein (TAIR:AT5G57380.1).
Link
InterPro Scan - TAIR

AT4G30210.1

Model type
Protein coding
Short Description
P450 reductase 2
Curator Summary
Encodes NADPH-cytochrome P450 reductase that catalyzes the first oxidative step of the phenylpropanoid general pathway.
Computational Description
P450 reductase 2 (ATR2); FUNCTIONS IN: NADPH-hemoprotein reductase activity; INVOLVED IN: phenylpropanoid metabolic process; LOCATED IN: endoplasmic reticulum, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Oxidoreductase FAD/NAD(P)-binding (InterPro:IPR001433), Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Riboflavin synthase-like beta-barrel (InterPro:IPR017938), FAD-binding, type 1 (InterPro:IPR003097), Flavodoxin/nitric oxide synthase (InterPro:IPR008254), Flavoprotein pyridine nucleotide cytochrome reductase (InterPro:IPR001709); BEST Arabidopsis thaliana protein match is: P450 reductase 1 (TAIR:AT4G24520.1); Has 6811 Blast hits to 6438 proteins in 1585 species: Archae - 5; Bacteria - 3394; Metazoa - 1038; Fungi - 872; Plants - 570; Viruses - 0; Other Eukaryotes - 932 (source: NCBI BLink).
Link
InterPro Scan - TAIR