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52-0060-2

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 8128692 [Map]; Strand: c
      • AT5G24050.1 - [+] show detail - Domain of unknown function (DUF313)
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 52-0060-2 - 5-prime edge 
    AAAGACGCTA AATTGATCTT TGAGAAGACT CTGTTCGTGA CTGATGTAAA 
    CCCAACAAAG AACCGTCTCT CAATGCCTTT CAACAACTTA CTCCGAAACG 
    ATTTCCTGAC GTCTGTGGAG TCCATAATCA TAAACGAAGA CATCAACAAC 
    AATAAGAAGA TTGGAGTGGG AGCGATTCTC GTGGATCAAC GGTGTAAAAA 
    GTGGGGTGTG ATGTTAAAGA GATGGGAGAT GAAGAANGAA TCANGTAAAG 
    GAAGCTGGAG TTACAATTTG ATTTGTGGGT GGAACGACAT CGTTGAGGCT 
    AACAGATTGA AAGAAGGCGA CAACATTACT CTTTGGTCGT TTANGTGCTG 
    TGGAATCCTC TGCTTTGCCA TGGAACAGAN TAGCTCTTTC CTTGCTCTCT 
    GTCTCTGCTA CT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 8128807 [Map]; Strand: c
      • AT5G24050.1 - [+] show detail - Domain of unknown function (DUF313)
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 52-0060-2 - 3-prime edge 
    TCAGACTTTG GCTTCTTTCA TGTTTGTCAT CACCTTGACA AGCCACTCAG 
    GTGTCTCTCT CGCCGTTTGT GAAAAAGGAG CAACATTTGC TTTCTTGACT 
    CCACCACTAC GCTTCCTTTG TTCCACAGCA CGTCTCTTGC GGCTTGTGTT 
    CTCCATTAGG CACAAAGACA TAGTACATGG GAAATTAGGG TTTGGTGGGT 
    CTTTCGTCTC CGTCTTTTGG TACTCAGCCG TCTTGTGACC AAAGAGTCCG 
    AGTGAAGAAC AAGGTTCTGA ACTAGGGTTT TGTAATGTTT TTGTCTCGGA 
    ATTAGCGGCA ATGAAACATG AAGAGGATAG CCCTTGAAGA TGGTTTTGTG 
    GGTCTTCGAT CTCAGAATCG GTANGGAACT GGTTAAGATC

AT5G24050.1

Model type
Protein coding
Short Description
Domain of unknown function (DUF313)
Computational Description
FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF313 (InterPro:IPR005508), Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF313) (TAIR:AT3G24850.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR