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52-0069-2

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 11185561 [Map]; Strand: w
      • AT5G29550.1 - [+] show detail - transposable element gene
        Distance: -1047; Region: intergenic
      • AT5G29560.1 - [+] show detail - caleosin-related family protein
        Distance: 4982; Region: intergenic
    Flanking Genome Sequence: 52-0069-2 - 5-prime edge 
    TTGGCATGTG ATACCTTTTC GGAAAGCCCA AAGACAGCCC TCCGACGAAA 
    GAAGCAGGAC AATGGAACTT TTCCATTGAC TTTTGGTCGA CCCCAAATTT 
    TGACCTTTAA GTACTTTTTC GGGCATTTTC GTGATTTGGG CTATATTACG 
    GACCCAAAAT TACTTGTTCA AGCATTGTTT TCGAATTTTT TCATGCATCA 
    AAGCCCGTTA AGACTAGATG GGGTATCCCT ACATAGCGGG TGGGACCCAC 
    GGCGAATGGT TCATCAAGTC TTCAAAAAAG AATATATACG ATTGCATTGC 
    ATATACTAAC GGATGCGATC ATACCAGCAC TAATGCACCG GATCCCATCA 
    GAACTCCGCA GTTAAACGTG CTTGGGCGAN ANTAGTNCTA AGGATG

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 11185445 [Map]; Strand: w
      • AT5G29550.1 - [+] show detail - transposable element gene
        Distance: -931; Region: promoter
    Flanking Genome Sequence: 52-0069-2 - 3-prime edge 
    CATGCCAAGT TTGGCCTCAC GGCCTAAAAG TTATGGAGTC ATAAAGTTTT 
    AACCAAAAAA AAAAGGTTAA ACNTCAAANA GGGATGCANC NCNAGGACTT 
    CCCGGGAGGT CACCCNTCCT ANTNNTGTTT TCGCCCAANC NCCCTTAANT 
    GCGGAGTTTT NATGGGATCN CCANCCCGGG CCNTNNACCA CCCNTGNCCC 
    TNTAATNTAT GCAANGCAAT CGTNTNTNTT NTTTTTTNAA AACTTGATNA 
    ACCNTTCNCC GNGGGTNTNA CCCNNTNTGT AGGGATNCCC CNTNTANTCN 
    TAACGGGCTT TGNTGCNTNA AAAAATTCAA AAACAATGNT TGAACAAGTA 
    ATTTTGGGTC CGTANTNTAN CCCAAATCAC NAAAATGCCC GAAAAAGTNC 
    TTAAAGGTCA AAATTTGGGG TCNACAAAAA GTCANTGGAA AAGTTCCATT 
    GTCCTGNTTT TTTCNTCGGA GGGCTGTNTT TGGGCTTTCC NAAAAGGTNT 
    CACATGCCAA GTTTGGCCTC ACGGTNTAAA AGTTNTGGAG TCNTAAAGTT 
    TTAACCAAAA AAAAANGGGT TAACCTTAAA AANGGGTTNC CCCCNANGNN 
    TTNCCNGGGG GGNNCCCNTT TNTNTTTTNT TTTTNCCCNA ANNNCCTTNA 
    NNNNNGGNNT TTNNANGGAN TNNNNNNNCN NGGNCNNNNA CNNNCNNNNC 
    NNNAA

AT5G29550.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family (Athila), has a 7.4e-126 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)
Link
InterPro Scan - TAIR

AT5G29560.1

Model type
Protein coding
Short Description
caleosin-related family protein
Computational Description
caleosin-related family protein; CONTAINS InterPro DOMAIN/s: EF-HAND 2 (InterPro:IPR018249), Caleosin related (InterPro:IPR007736); BEST Arabidopsis thaliana protein match is: ARABIDOPSIS THALIANA PEROXYGENASE 2 (TAIR:AT5G55240.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR