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52-0074-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 888289 [Map]; Strand: w
      • AT1G03550.1 - [+] show detail - Secretory carrier membrane protein (SCAMP) family protein
        Distance: -333; Region: promoter
    Flanking Genome Sequence: 52-0074-1 - 5-prime edge 
    CTCGAAAGTG ACATGTCACA ACTTCGTTTG TAACAGATCA TTCATTCTAT 
    TGTTAGTTTA TCAAAGTTAT AACTCAATTA TATAATGAAG ATTTAACTAT 
    ATTAAAAGAT CAATACTATA ATGTTTCAGC NTTATCGTGC TAACATGTTA 
    CATGCAAAGA ACACACCGAA CGAAGCACAA GAAAGGGAAA TTATAAAAAG 
    ATTTCAGATC TCGATTTTAA AAACCGGTCC AACCACAAAA TATCATGTAT 
    ATACAAATTA CATAAAACAT TATTCGTGAG AAACTTTAAA ACTTAGCCGA 
    GTGTTAATTA TAAAAGATGG GATGTTAAGT CCAGTTAATT TTCGACGTAT 
    TTATATATAT GTCGTATTAA ATACGTCAAA AACTAACCGT TTTTAAACAT 
    AACCAAAACG ATTTAATAAA ATGAAAATAA GTGTTAAAAA TTTAAATTAT 
    GTGTAAACTA TATTGAACAT AACACATCTC TTACGATTTT GGATATTATT 
    CGTGAGAAGC T

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 888173 [Map]; Strand: w
      • AT1G03550.1 - [+] show detail - Secretory carrier membrane protein (SCAMP) family protein
        Distance: -217; Region: promoter
    Flanking Genome Sequence: 52-0074-1 - 3-prime edge 
    CTTTCGAGCC ACTAACCGCA AAGTTCGGAT TCAAACTTTT GAAGTGCGTT 
    AAAGTGTTCG TAACCAATAT TTAAAACCGG ATTCAAATTG AATCAAACCG 
    TTGAAAAACT CAACATGAAA AGCAAAACCG GAATTCTATT ACTAGTGAAC 
    TAAATCCAAT TGACCGAATA AAATCCAGTA AACCGATCCA TAAACCAAAA 
    TTGGAAGAAA ACAATGCCTG TTTAATAGGT GTTGAAACTT TGCTGAAAAA 
    AAACGAAGCG AGCACCCTCT AAAATGCCTT CGATTTCTCT GGCGCCATTG 
    ATTTAGTTTT CTCTCTCTGA CTACAAAGTA TCCATTCGTT CAAACCAGTT 
    TCTTCCCATT TTCGATTTCT GTCAAAATTC ACCAACCAAC TCCAAAAACT 
    CTGTTATTGA ATAAGTTTCT TGATCTTAAA ACAAACGATC TCAAAG

AT1G03550.1

Model type
Protein coding
Short Description
Secretory carrier membrane protein (SCAMP) family protein
Computational Description
Secretory carrier membrane protein (SCAMP) family protein; FUNCTIONS IN: transmembrane transporter activity; INVOLVED IN: protein transport; LOCATED IN: integral to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SCAMP (InterPro:IPR007273); BEST Arabidopsis thaliana protein match is: Secretory carrier membrane protein (SCAMP) family protein (TAIR:AT2G20840.1); Has 670 Blast hits to 668 proteins in 104 species: Archae - 0; Bacteria - 0; Metazoa - 376; Fungi - 14; Plants - 226; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink).
Link
InterPro Scan - TAIR