Home
Mutant Lines
52-0087-1

52-0087-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 5; Position: 7971215 [Map]; Strand: c
- AT5G23650.1 - [+] show detail - Homeodomain-like transcriptional regulator
  Distance: 196; Region: intergenic
- AT5G23660.1 - [+] show detail - homolog of Medicago truncatula MTN3
  Distance: 436; Region: intergenic

GTTACACCAA TATCTCGTTC CCTAAACGTA TGTATGATAA CTATGAGTAT 
ATATATTTTG ATTTTTAGTT TATGTTTAAT TGGAAATAAA AATAGGCTTA 
TATGTTTTCT TAAAGAAATT AATAGGTTTA TATATATGTT ACACCCCAAA 
CCATATGATA CAAGAAAAAA ACATCAAATA ATCCCATACC AAACAACAAG 
ATGAAATAAG TATCCTTCCA CCTTAAATGA AGGACAAAAC ATGAAGTTTA 
AGACCTATCT TTGAGATCTA GTTATATAAG TCAATGTTGT ATGTTATTGA 
ATCCATGTTG ATCGGTGCAC TAGGACCTGA GTAGTAAGGT ACTGAATCAT 
GTTGAACTCC AGAAGTCATA TGAGATGGAG CCAAGTGGTT CAAGTTTGTT 
CCAAAAGGTG AGAGCATTGG TCCAACCATT GGTTGACTTA TGGTGGACGT 
TCCATACATA GGAATATTGG CTGATGGTTG CGAAGCGACT TGTGTGTTCC 
ATATGATGGG TGCATCATAT GTAGGATGGT TTTGTGATGG CTGTGAAATG 
ACTTGAGTGG CTTGTGCATT CCATATGTTG TTGTGTGTAC CATATATAGG 
AATGTCAAGT GATGGTTGCA AAGTGGTTTG ATTGGCTTGA GTGTTGGAAG 
CAGTAGCACC ATTGNTGNTT ATTTTTTGCC ATGTGATTGG TCTTTGNTTT 
GTTGAGATAC TTTTGNTTTC CGCAATAG

3 prime edge [+] show sequence

Chromosome: 5; Position: 7971331 [Map]; Strand: c
- AT5G23650.1 - [+] show detail - Homeodomain-like transcriptional regulator
  Distance: 312; Region: intergenic
- AT5G23660.1 - [+] show detail - homolog of Medicago truncatula MTN3
  Distance: 320; Region: intergenic

GGTGTAACTA ACACTACTCC TATACTCTCA TACAATGAAA ATTCTAATTA 
AATAATGATA TGAAAACAAA TACTATTTGA CACTTCGATT AGAAAAATAT 
ATGTATCATT AAAATTCGAA GACTAAGAAC CTGAAAGTGG ATTAACATTC 
AGCAATTCAA ATTTGATGGC CAATTTCACT TTATATATAT GTATCACTCA 
TAAACTTATG AGTTTCCTCT AGTTGATACT TACACTTTTT ACATATTATT 
GGCATTTTAG AATTTAAGAA TTAAACTGTT TCTAATTTTA AAATTCAATC 
ATTTTTTTGA CATTTTCTGT AAAACTAATA GTTTTGAGTT TTTGTTTTTG 
ATTTTTGCAT GCTAAAAAAG ATAGTTGCTT GAGAATTTTC ATTTTCTTTT 
CAACTTGGAA AATATTTATA TGCAACAGAT AGTTTCATTA CATTGTCCCT 
AAGTAAAAGA AAAAGAGAAA AAATTAACTC AGGAAAATGT AATTCCCGAT 
TTAATTAATC CTCGAATACG CATACTTCGA TAAACTTTGA AAATCACTAC 
AACGAAACTA GTACACGTGG ACAATGGTGA TTGATAGGTA TATCAAGAAG 
GGTACAAAGT CAAAATAGTC AACAAATAGG TTTCTTATTA GGGTTTCTTG 
GGCNAACTCA AGTAGCTGCA GCACTGTTTC TAACTCCCTG ACCATTTTCA 
ATCTCAGCAT TTCGATCGTT ACAGTTACAT GTGTTACCGA TCGGACGA

AT5G23650.1

Model type: Protein coding
Short Description: Homeodomain-like transcriptional regulator
Computational Description: Homeodomain-like transcriptional regulator; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), SANT, eukarya (InterPro:IPR017884), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: Duplicated homeodomain-like superfamily protein (TAIR:AT5G08520.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G23660.1

Model type: Protein coding
Short Description: homolog of Medicago truncatula MTN3
Curator Summary: homolog of the Medicago nodulin MTN3
Computational Description: homolog of Medicago truncatula MTN3 (MTN3); INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, integral to membrane, membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: MtN3/saliva-related transmembrane protein, conserved region (InterPro:IPR018169), RAG1-activating protein 1 homologue (InterPro:IPR018179), RAG1-activating protein-1-related (InterPro:IPR004316); BEST Arabidopsis thaliana protein match is: Nodulin MtN3 family protein (TAIR:AT3G48740.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR