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52-0093-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 15757815 [Map]; Strand: w
      • AT2G37550.1 - [+] show detail - ARF-GAP domain 7
        Distance: -214; Region: promoter
      • AT2G37550.2 - [+] show detail - ARF-GAP domain 7
        Distance: -284; Region: promoter
      • AT2G37555.1 - [+] show detail - other RNA
        Distance: 0; Region: exon1 (NonCoding)
      • AT2G37560.1 - [+] show detail - origin recognition complex second largest subunit 2
        Distance: -830; Region: promoter
      • AT2G37560.2 - [+] show detail - origin recognition complex second largest subunit 2
        Distance: -833; Region: promoter
    Flanking Genome Sequence: 52-0093-1 - 5-prime edge 
    CTTGTGGAAG TCAGTTTAAA GTCCAGGTGA GCATTAAGAC ACCAAATGTC 
    CTTGCTGTGA ATATGAACGG GAGAACAACT GATGGGGGTC TGAAGAAGGA 
    ATTAACTGAA GTGATGAAGC AGGGACAGAT TCTGAGTGTC AAGGTTTGTT 
    TCTTGTTCAT TGATTGTTAT GCATTGCACT GTTTTAAACC ATAAGTCTTT 
    GATGATATTC TTTTATTTTT CACTAATAAG CAGATAAAAA AAGATTGGTA 
    CTGGAATTGT CCAACAGGTG AACCTAATGT AGAGTCTTAT TAACATAACT 
    AAAGGCCAAA AAGCGGCAGA ACACTTCATG AAGCATGGAC TTGAGGAATT 
    GTTCAGCTTC ACATTATTCC GGTCCACGTG TCTGGTACGG TAGAGTAGCC 
    AAATCCCAGC AAAGTCACAG TTACCAGAAT TTACTCTTTC ATTCTGAATT 
    GTTGTATCTT TTTCTTTCTT TTCTTTTGAA CTCAAATCCT TGTTATCTCC 
    CTGTTGACTA TCTTTTTAGA ACAATAATGC TCATTAGAAG CT

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 15757699 [Map]; Strand: w
      • AT2G37550.1 - [+] show detail - ARF-GAP domain 7
        Distance: -98; Region: promoter
      • AT2G37550.2 - [+] show detail - ARF-GAP domain 7
        Distance: -168; Region: promoter
      • AT2G37555.1 - [+] show detail - other RNA
        Distance: 0; Region: exon1 (NonCoding)
      • AT2G37560.1 - [+] show detail - origin recognition complex second largest subunit 2
        Distance: -946; Region: promoter
      • AT2G37560.2 - [+] show detail - origin recognition complex second largest subunit 2
        Distance: -949; Region: promoter
    Flanking Genome Sequence: 52-0093-1 - 3-prime edge 
    TCCACAAGTT AGGGTTGAGC GGAAGAAGAA AACGAGAGTA GTTTTAGTTT 
    TTTTGGTTGT TCCTTCCAGA CCCGGCCCGA TATCGAAGCG ACCCAAGCCC 
    ATGCTTTTTG AGCAAACACG TTTTTAGCAG AGACCTTGGA AATATTGAGT 
    GAAGCTCTCA CGTGACAAAA ACACGCACAA AATTATTCAA GTTACCACGT 
    TTATTAAGCA AAACGATTGA GCCAAAAAAA ACGCATCAGA ATCTGGAACC 
    TGGATCAGAT CTAGTCAGGG GTCAGATCGG AGAGCCGGCA ATATAATGGC 
    AGCGGCGAGA CGATTACGGA CGCTCCAATC TCAGCCGGAG AACAAGGTCT 
    GTGTCGATTG CTCCCAGAAG AATCCACAAT GGGCATCGAT TTCATATGGA 
    ATCTTCATGT GCTTGGAATG CTCCGGTAAG CACCGTGGTT TAGGTGTTCA 
    CATCTCATTC GTCAGATCCG TCACCATGGA TTCATGGTCC GAGATCCAGA 
    TCAAGAAAAT GGACGCTGGA GGCAACGAGC GTCTCAACAA TTTTCTCGCT 
    CAGTACGGGA TCTCGAAAGA GACTGATATC ATCTCCAAGT ACAATTCCAA 
    CGCCGCGTCT GTGTATCGAG ATCGGATC

AT2G37550.1

Model type
Protein coding
Short Description
ARF-GAP domain 7
Curator Summary
A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes.
Computational Description
ARF-GAP domain 7 (AGD7); FUNCTIONS IN: ARF GTPase activator activity, DNA binding, zinc ion binding; INVOLVED IN: regulation of ARF GTPase activity; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Arf GTPase activating protein (InterPro:IPR001164); BEST Arabidopsis thaliana protein match is: ARF-GAP domain 6 (TAIR:AT3G53710.2); Has 3753 Blast hits to 3670 proteins in 253 species: Archae - 0; Bacteria - 30; Metazoa - 1888; Fungi - 664; Plants - 561; Viruses - 0; Other Eukaryotes - 610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G37550.2

Model type
Protein coding
Short Description
ARF-GAP domain 7
Curator Summary
A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes.
Computational Description
ARF-GAP domain 7 (AGD7); FUNCTIONS IN: ARF GTPase activator activity, DNA binding, zinc ion binding; INVOLVED IN: regulation of ARF GTPase activity; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Arf GTPase activating protein (InterPro:IPR001164); BEST Arabidopsis thaliana protein match is: ARF-GAP domain 6 (TAIR:AT3G53710.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G37555.1

Model type
Other RNA
Short Description
other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT2G37550
Link
InterPro Scan - TAIR

AT2G37560.1

Model type
Protein coding
Short Description
origin recognition complex second largest subunit 2
Curator Summary
Origin Recognition Complex subunit 2. Involved in the initiation of DNA replication. Regulated transcriptionally during cell cycle, peaking at G1/S-phase. Target of E2F/DF family of transcription factors. Interacts strongly with all ORC subunits.
Computational Description
origin recognition complex second largest subunit 2 (ORC2); CONTAINS InterPro DOMAIN/s: Origin recognition complex, subunit 2 (InterPro:IPR007220); Has 366 Blast hits to 364 proteins in 185 species: Archae - 0; Bacteria - 0; Metazoa - 129; Fungi - 134; Plants - 46; Viruses - 0; Other Eukaryotes - 57 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G37560.2

Model type
Protein coding
Short Description
origin recognition complex second largest subunit 2
Curator Summary
Origin Recognition Complex subunit 2. Involved in the initiation of DNA replication. Regulated transcriptionally during cell cycle, peaking at G1/S-phase. Target of E2F/DF family of transcription factors. Interacts strongly with all ORC subunits.
Computational Description
origin recognition complex second largest subunit 2 (ORC2); CONTAINS InterPro DOMAIN/s: Origin recognition complex, subunit 2 (InterPro:IPR007220); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR