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52-0095-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 8280363 [Map]; Strand: c
      • AT5G24316.1 - [+] show detail - proline-rich family protein
        Distance: -399; Region: promoter
    Flanking Genome Sequence: 52-0095-1 - 5-prime edge 
    CTNTAAAAAC TAACAAAATC GGTTATACGA TAACGGTCGG TACGGGATTT 
    TCCCATCCTA CTTTATTAAT GGCTAGATGC CAAATGTCAT TTGAACAGAA 
    TTTAATCAAA AGTTAAATAA TAAAGACGAA GAAACAAATC TCATTTTGTC 
    TAAAATAAAA TTTCTTAAAA AATATTTTTA AACAGAATCT ATAACCTTTT 
    TATTATTATT TTAATCTTTC TAGATTTAGC TATTGAATAC CCCTTCCTAA 
    ATTAAAACAT ATGGATTCTC TCAAGAGAGG AAACAATAAT GGTATAACTT 
    AATTATGGAG AATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 8281441 [Map]; Strand: c
      • AT5G24316.1 - [+] show detail - proline-rich family protein
        Distance: -1477; Region: intergenic
      • AT5G24318.1 - [+] show detail - O-Glycosyl hydrolases family 17 protein
        Distance: 535; Region: intergenic
    Flanking Genome Sequence: 52-0095-1 - 3-prime edge 
    GTACTGAGAC CAAATTAAAA AGAATTAATG TTAAATCTTG TAACTATTGA 
    GACTAACATT TTAAAACGTT ATCTTGTAAC TTTTTTTTTC ATCCTATTTA 
    ATTTAAAACT CAAAAAAGGC AAACATAATT ACCTGATGAA TGTTGTTATA 
    TAAGTGATAC GAAACGGTTT GGTGCACACC AAGTAAACAT ATCTTGTAAC 
    TATTGAGACC AAATTAAAAG GAATTTAAAA CGCGTTTTCC TCTGTTTTAT 
    ATTACTTATC CTTTTAGTTC ATTTCACATA AATTAAGAAA ACAAATAAAT 
    TTATTATTTT ACCCCTAATT AATACACTGT TATTAAATAT ATATAATTAA 
    TAAGCTAAAA ATATGACAAA TTAAAAAATT TATTATAAAT CTGCATTATA 
    AATACACTAT CCATAAGTAA GATGAAAACA AAATTTTAAC TCTAAAAGAA 
    AAATAAAACA AAACTGAGGG AATATCTTGT AACTATTTAN ACCAAATTTG 
    ANAAGCATAT TTTTGGTCCG GTTCATTAAA CAAAACAACC ATCATAAAGC 
    TAAAACTACA TGCATGANAC GACGTTGTTA CCCAAATGAA GAGGGAGGTT 
    TGTGTTTGTT TCGTATAAAC CATATACAAA TTTTAAAGTT TCACTCATAC 
    TTTTATAGAC GCGACCAATA CTACTAGCAT AATCCAAAAT CATATGCATA 
    TAAAAAGGAC AATACTATTT AATATGTTTG TAAAGGACAT TCCACTC

AT5G24316.1

Model type
Protein coding
Short Description
proline-rich family protein
Computational Description
proline-rich family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G24318.1

Model type
Protein coding
Short Description
O-Glycosyl hydrolases family 17 protein
Computational Description
O-Glycosyl hydrolases family 17 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: O-Glycosyl hydrolases family 17 protein (TAIR:AT3G55430.1); Has 2814 Blast hits to 2741 proteins in 127 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 2803; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).
Link
InterPro Scan - TAIR