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52-0095-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 8280363 [Map]; Strand: c
      • AT5G24316.1 - [+] show detail - proline-rich family protein
        Distance: -399; Region: promoter
    Flanking Genome Sequence: 52-0095-1 - 5-prime edge
    CTNTAAAAAC TAACAAAATC GGTTATACGA TAACGGTCGG TACGGGATTT 
    TCCCATCCTA CTTTATTAAT GGCTAGATGC CAAATGTCAT TTGAACAGAA
    TTTAATCAAA AGTTAAATAA TAAAGACGAA GAAACAAATC TCATTTTGTC
    TAAAATAAAA TTTCTTAAAA AATATTTTTA AACAGAATCT ATAACCTTTT
    TATTATTATT TTAATCTTTC TAGATTTAGC TATTGAATAC CCCTTCCTAA
    ATTAAAACAT ATGGATTCTC TCAAGAGAGG AAACAATAAT GGTATAACTT
    AATTATGGAG AATT
  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 8281441 [Map]; Strand: c
      • AT5G24316.1 - [+] show detail - proline-rich family protein
        Distance: -1477; Region: intergenic
      • AT5G24318.1 - [+] show detail - O-Glycosyl hydrolases family 17 protein
        Distance: 535; Region: intergenic
    Flanking Genome Sequence: 52-0095-1 - 3-prime edge
    GTACTGAGAC CAAATTAAAA AGAATTAATG TTAAATCTTG TAACTATTGA 
    GACTAACATT TTAAAACGTT ATCTTGTAAC TTTTTTTTTC ATCCTATTTA
    ATTTAAAACT CAAAAAAGGC AAACATAATT ACCTGATGAA TGTTGTTATA
    TAAGTGATAC GAAACGGTTT GGTGCACACC AAGTAAACAT ATCTTGTAAC
    TATTGAGACC AAATTAAAAG GAATTTAAAA CGCGTTTTCC TCTGTTTTAT
    ATTACTTATC CTTTTAGTTC ATTTCACATA AATTAAGAAA ACAAATAAAT
    TTATTATTTT ACCCCTAATT AATACACTGT TATTAAATAT ATATAATTAA
    TAAGCTAAAA ATATGACAAA TTAAAAAATT TATTATAAAT CTGCATTATA
    AATACACTAT CCATAAGTAA GATGAAAACA AAATTTTAAC TCTAAAAGAA
    AAATAAAACA AAACTGAGGG AATATCTTGT AACTATTTAN ACCAAATTTG
    ANAAGCATAT TTTTGGTCCG GTTCATTAAA CAAAACAACC ATCATAAAGC
    TAAAACTACA TGCATGANAC GACGTTGTTA CCCAAATGAA GAGGGAGGTT
    TGTGTTTGTT TCGTATAAAC CATATACAAA TTTTAAAGTT TCACTCATAC
    TTTTATAGAC GCGACCAATA CTACTAGCAT AATCCAAAAT CATATGCATA
    TAAAAAGGAC AATACTATTT AATATGTTTG TAAAGGACAT TCCACTC

AT5G24316.1

Model type
Protein coding
Short Description
proline-rich family protein
Computational Description
proline-rich family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G24318.1

Model type
Protein coding
Short Description
O-Glycosyl hydrolases family 17 protein
Computational Description
O-Glycosyl hydrolases family 17 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: O-Glycosyl hydrolases family 17 protein (TAIR:AT3G55430.1); Has 2814 Blast hits to 2741 proteins in 127 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 2803; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).
Link
InterPro Scan - TAIR