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52-0100-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 13590274 [Map]; Strand: w
      • AT3G33055.1 - [+] show detail - transposable element gene
        Distance: 6300; Region: intergenic
      • AT3G33058.1 - [+] show detail - transposable element gene
        Distance: -11526; Region: intergenic
    Flanking Genome Sequence: 52-0100-1 - 5-prime edge
    AGTGTATCCT TGTTAAAAGA CACAAAGCCA AAGACTCATA TAGAATTTGG 
    CTACATCATG AAAGCTACCA NCCNGGGCNA GTAAGAGCAC GCNTGCNCTA
    TAGAGTCTAA TATGACTTGA TTTCATGTGT ATGATTGAGT ATAAGAACTT
    AAACCGNGAC CCAGATCGGT ANNNGNGTGA GNAGTGGGNA CTTGTTANAA
    GACACANAGC CNAAGACTCA TATGGACTNT GGCTACACCA TGAGAGCTNT
    CAGACCGGGC NGTAAAGCAN GCGGNGCGCT ATNGANTCGN ATNTGACTNG
    ATGACNTGTG TATGATNGGG NATAAGAACN GNNACCGNAA CCNCGTCNTA
    TANGCNGTAA NTNGGGTTTN CTTGTTAGAA GACACNNNGC CNAAGATNCA
    TATNGNNTNN GGGTACNCCA TGAAAGCTAC CGNNCNGGGC NNGCNNGGNA
    CNCGTGNNNT NGANTGNNNG GANG
  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 13592474 [Map]; Strand: w
      • AT3G33055.1 - [+] show detail - transposable element gene
        Distance: 8500; Region: intergenic
      • AT3G33058.1 - [+] show detail - transposable element gene
        Distance: -9326; Region: intergenic
    Flanking Genome Sequence: 52-0100-1 - 3-prime edge
    GATACACTAC TTAGGCTTTT AAGATCGAGT TGCGGTTTAA GTTGTTATAC 
    TCAATCATAC ACATGACAAC AAGTCATATT CGACTCCAAA ACACTAACCA
    ACCATCTTCT TGCTTCTCAA AACTTTCATG GTGTAGCGAA AGTCCATATG
    AGTCTTTGGC TTTGTGTCTT CTAACAAGGA AACACTAATT AGGCTTATAA
    GATCGGGTTG CGGTTTAAGT TCTTATACTC AATCATACAC ATGACAACAA
    GTCATATTCG ACTCCAAAAC ACTAACCAAC CTTCTTCTTG CTTCTCAAAG
    CT

AT3G33055.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family (Athila), has a 3.2e-282 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)
Link
InterPro Scan - TAIR

AT3G33058.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family (Athila), has a 2.4e-112 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)
Link
InterPro Scan - TAIR