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52-0112-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 3614604 [Map]; Strand: w
      • AT5G11320.2 - [+] show detail - Flavin-binding monooxygenase family protein
        Distance: -1243; Region: intergenic
      • AT5G11325.1 - [+] show detail - pre-tRNA
        Distance: -2454; Region: intergenic
    Flanking Genome Sequence: 52-0112-1 - 5-prime edge
    GTNAAAAACN AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCTT GCAATATCAA TATTTAACAT ATTTTATGCG
    AAGCCATATT CTTCAAAGCA ACTAATTATG GATCATTTAA ATCTAGATTG
    GATTTTATAC TGGACGCAAC AACATCACAT TTACNTTATA AATATACNGG
    CTGATTAATT AGCTTGATAT TTCGTTTTGT TCAATAGATT CTATAAACTA
    GTTACTAACA GATATGAACC AAAATTACNT TCTATGATAT CTTAAAATAA
    TATGCATATA GAATCAAAAA TTATAAAAAT ACCGAGATAT CATTACTAAA
    AAAATCCTAA GGATGAAATA TTTTTGTATA TATATGTATA TAGTTTATAC
    TTTATAGGTA AAGAGGAAGA GAAATATTGG GACTTAAATG TTATTTTAAT
    GTGACTTATT TTAGTCAGAA ATGTATATAT GCGCATGGTA GTTTAAGCTG
    TAAATTTAAT GATGCATTGC ATGCTAAACC TCATCTCATC GATTAACGTT
    TGACCTTATT ATGGATACCA TTTCACACAG ACACAATTGA TTAAGACGTA
    AACGATATCC AACGTAAATG TTTTAACTAT ATTAACTTGC TTTCTGGGTA
    TTATTTAATC GAAAATAAAC TGTATATACG CTTGACTTGG ATGCATATTA
    TTACTACATA GACCCAATGT TTGTTTGCTC CAATCAAATA AAAACCTTAT
    TATGGNCAAG AGATGAATGA CTTTNTCACC NGGANTTAAT TAAATG
  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 3614587 [Map]; Strand: w
      • AT5G11320.2 - [+] show detail - Flavin-binding monooxygenase family protein
        Distance: -1226; Region: intergenic
      • AT5G11325.1 - [+] show detail - pre-tRNA
        Distance: -2471; Region: intergenic
    Flanking Genome Sequence: 52-0112-1 - 3-prime edge
    AAAACGGTNG AGGTATTTTA CCGACCGTTA CCGACCGTTT TCATTAGAGA 
    TCATAGGGGA AGTGGAGGTC GGCTGCATTA GTTGACATTT AACGAAGGAG
    TGGCAAGTCA AATTACATTT TCCACATATC CACTTATTAA TTATGTGTTT
    GGTGCAATTC TCATTAATTG TGCTTGAATA TATCATCCCT CCAGCTACCT
    CAAAATCAAA GCGTAGAAGT AGTTATCTTT TGATTATGTA TCTTTCTTTC
    TCACGAAAAT GTAATAATCT ATATGGTATA CTATAATTTA TGTTGGAAAG
    AAGATGAATA CTTATGATGG AAAGAAGGTC ATCTAAACCT TTGTTAAAGT
    AAACAATATT TGATTAATTG ATAATTTAAT GACATGAATC TTCTGTTTCC
    ACTTACTTGA CCCCAACAAA CTTTCGGTAA AAGATTTAAT TATAACAATT
    GTACGAATGT GAATATGTGA ATGTGATCAT GGAAGTCATG AAACACGTCA
    ACGCATATAT CATATACTAC AATATAGTTA GCGGATGTTC GTTTTAGTGT
    TTAAAGACAT GTTTAGCTTT TACATCCTGA CATCAACACT GTTTTAATGT
    TTTTTGTACT AAACATAGAA CTGTTTTTTT TTTAATAAAC GTACACTATA
    CACAACATAN TTGAATTATN TTTAACATAA TGCCCTNTTA NCATATGGTT
    GCTCACGAAA GTTTCAAAGT NATTTAAAAT CTTAACCATA ATATATAGNA
    ANCATGGTGG GATCGCATTT TCNCATATAA AAAATNCTTA GGGA

AT5G11320.2

Model type
Protein coding
Short Description
Flavin-binding monooxygenase family protein
Curator Summary
Belongs to the YUC gene family. Encodes a predicted flavin monooxygenase YUC4 involved in auxin biosynthesis and plant development.
Computational Description
YUCCA4 (YUC4); FUNCTIONS IN: NADP or NADPH binding, oxidoreductase activity, monooxygenase activity, FAD binding, flavin-containing monooxygenase activity; INVOLVED IN: in 7 processes; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pyridine nucleotide-disulphide oxidoreductase, class-II (InterPro:IPR000103), FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), Flavin-containing monooxygenase-like (InterPro:IPR020946); BEST Arabidopsis thaliana protein match is: Flavin-binding monooxygenase family protein (TAIR:AT4G32540.1); Has 12265 Blast hits to 12250 proteins in 1811 species: Archae - 85; Bacteria - 7080; Metazoa - 781; Fungi - 1596; Plants - 658; Viruses - 0; Other Eukaryotes - 2065 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G11325.1

Model type
Pre-tRNA
Short Description
pre-tRNA
Computational Description
tRNA-Gly (anticodon: TCC)
Link
InterPro Scan - TAIR