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52-0118-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 6687096 [Map]; Strand: w
      • AT5G19780.1 - [+] show detail - tubulin alpha-5
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 52-0118-1 - 5-prime edge 
    TAAAAACTAA CAAAATCGGT TATACTGATA ACGGTCGGTA CGGGATTTTC 
    CCATCCTACT TTCATCCCCT GGTTAAACCA AAAAAAGAAG ATCTCACTCT 
    CACCGCCTTC ATTTCCTCGA TCTCCGTCTT CCTCCTTCTC CGTCTGTCGC 
    AGAGCATCGC TCGAATTAGG GTTTCTGCTG AGAGAAGATG AGGGAAATCA 
    TTAGCATTCA TATCGGACAA GCCGGGATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 6687052 [Map]; Strand: w
      • AT5G19780.1 - [+] show detail - tubulin alpha-5
        Distance: -22; Region: promoter
    Flanking Genome Sequence: 52-0118-1 - 3-prime edge 
    ATATTTAACT TCGTTGGCAA ATTAGGTTTA TATTTTGTGA AGGGAAAATG 
    ATTAATTTAT TGAATTGGAT TTGATAATTT GTTGGGGTCC GCCATTTTGT 
    GACAGCCTGC CTTGGGTCCC ACGGCTTCGC TTTTGTTCGA AAATGAGTTC 
    ATTTTACAAT ATTGCCCACA CGATCCAGTT CATTCTACAG TTTCTCAATT 
    TTGGCTGGCA TAAATATCTT CGGCGGATAC ATGTTACTTA TTGTTATGGA 
    CCGGATTGGT TTACCGTCAA TTTAGGATAT AGGATCGAAT CGTGGATTGG 
    TTTATCGATC CGGTTCAATG TTTTTTTCAT TATTGTTTGT TCAAACAGAT 
    TCTACAAAAA AAAAAAANTT NNANCCCNTT TAANNAAATC NAGTGGGGTG 
    NANCNNCNNA NGGNCAAANG NCCCNNAAAN CTTTGGGCCA NNACNANCCT 
    NNAGNGGTTT TNNTNNCANN ANTTTTNTTN AGGNANNNCC TTTNNNAATA 
    AANANTTNGG GGGGGNCTTT TAAANCCCCA AAAAAAANCT TNTGGNNCNN 
    CNTTTGGGNT TTAAAGGGTT TTNAANNAAA ANTNGNTTAG GGGGAANCAA 
    AAAAAAGGGG GGGCCCCAAN ANAAAANTTN CAGGGGCCCT TCCNTTTTTT 
    TTTCCTNNNA AAANTNTTTG GACCCTCCCA ATNNNNTTTG NTTNAAANTT 
    TNGAAAAANT TTTTTGGGGC GNNCANNCCG NNCCNTACGG GN

AT5G19780.1

Model type
Protein coding
Short Description
tubulin alpha-5
Curator Summary
Encodes an isoform of alpha tubulin. Closely related to adjacent gene TUA3 suggesting recent duplication.
Computational Description
tubulin alpha-5 (TUA5); FUNCTIONS IN: structural constituent of cytoskeleton; INVOLVED IN: response to cadmium ion, microtubule-based process; LOCATED IN: tubulin complex, cytosol, cell wall, membrane; EXPRESSED IN: 6 plant structures; CONTAINS InterPro DOMAIN/s: Alpha tubulin (InterPro:IPR002452), Tubulin (InterPro:IPR000217), Tubulin/FtsZ, GTPase domain (InterPro:IPR003008), Tubulin/FtsZ, N-terminal (InterPro:IPR019746), Tubulin/FtsZ, C-terminal (InterPro:IPR008280), Beta tubulin, autoregulation binding site (InterPro:IPR013838), Tubulin, conserved site (InterPro:IPR017975), Tubulin/FtsZ, 2-layer sandwich domain (InterPro:IPR018316); BEST Arabidopsis thaliana protein match is: tubulin alpha-3 (TAIR:AT5G19770.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR