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52-0123-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 90249 [Map]; Strand: w
      • AT4G00220.1 - [+] show detail - Lateral organ boundaries (LOB) domain family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 52-0123-1 - 5-prime edge 
    GCGGTGGAGG AGGAGGACCG TGCGGCGCGT GCAAGTTCTT GAGAAGGAAG 
    TGTGTCGCTG GCTGCATCTT CGCTCCTTAC TTTGACTCCG AGCAAGGAGC 
    GGCGCACTTC GCGGCGGTTC ACAAGGTGTT CGGAGCGAGC AACGTCTCCA 
    AACTCCTCCA CCATGTTCCC GAGCATAAAC GACCAGACGC CGTCGTTTCA 
    ATCTGCTTTG AGGCTCAAGC TCGTCTCAGA GACCCTATCT ACGGCTGCGT 
    CTCTCACATC GTCTCTCTTC AGCAACAGGT TAATTATTCT TTTCATAACG 
    TTTAATTATA TGATTAGTAC TATTTATGAT GGGAAATTGC AACAGTTTTA 
    AGTTGATCTA CTGTCTCTAT ATCGTCACGT TGATCATTTT ATTTTAATCA 
    TTTTCTATGT AATTATGTTT TTAACTTCTT CTTTTTTTTT GAANAAAATT 
    GCGTTTTCAA ACTTTTTTTT TTNAAANNAA ATTTTTNNTT TNNNCTNANN 
    GTNCANTNAA NCTNCAANGT TAAGTCCTTT TTCCCATTNT ATGGATCNCC 
    NNTNATGGNC ATTTNTAGGA NNATNTCCCA TCNNGCANTG AGGCAAATNA 
    CCCTTTNTTA TGCANNNATT TTTTTTTNAA ANNNNTCCCN ANNNGNNTTT 
    TANGGAAAAA ATTTTTTTNN TTTTNNCCNN NNNNAAAANC CNCNNTNCNT 
    TAAAAAAAAN TTTNAAAAAN NAAAN

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 90133 [Map]; Strand: w
      • AT4G00220.1 - [+] show detail - Lateral organ boundaries (LOB) domain family protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 52-0123-1 - 3-prime edge 
    TCCACCGCTG CTGCTGCTAG GGTTTCCGCT ACTGCTCATC TTCCTTTTCT 
    ACCACACAAG TCCTTTTTAT TTTCCTTTCC TTTTACTAGC TAAGTGGTGA 
    TTAGGGTTTT GAGATACATG GATTTAACTC ATCGAGATTA TGATGCTTTT 
    TGGTTCGTGA TTAGAGAAAA AAAAGAAAGG GAACGTTTGG GAGAGAAGAA 
    AAGAGAGAAG GAGGAGATCG GACGTAAGCA AAACTAGGGT TTGGTTGTTG 
    GTAGATAATA AAAAAAGTAA AATAATAATT TAATTAGTCT TGTTATTACC 
    AAGACTAAAA AATAAAAAAG AGGTTAAGAC AAGAAGAAGA AGAAGAAAAA 
    AAAGACTTCA AAGCAACGCG ATGGAGCGTA CTTGTCTCGT GTTAAGCTCT 
    TTGCGTGAAG CAAAACATTC CATATCTTTC AACTTCTTCA TTGTTATTCC 
    CTTTCCTTCA CTTTTTCTAC TTCTGGTTTA ATTTTATTTT TGTTACATCG 
    AACCACACAA CTATCTTATG GTATATACCA ATTGTAATAT ATGAACATTC 
    AATCTAATAC TATGAGAAAT TAATTTTACA AACAAATAAA TGTATAAAAT 
    AAGCT

AT4G00220.1

Model type
Protein coding
Short Description
Lateral organ boundaries (LOB) domain family protein
Curator Summary
Encodes a protein containing a LOB domain that is expressed in embryos, flower primordium and lateral floral organ boundaries. Overexpression is correlated with activation of STM and KNAT1 and down regulation of PIN1 and reduced auxin transport levels. Ectopic expression in plants results in premature termination of the shoot apical meristem and small, lobed leaves.
Computational Description
JAGGED LATERAL ORGANS (JLO); CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: LOB domain-containing protein 18 (TAIR:AT2G45420.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR