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52-0135-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 89816 [Map]; Strand: c
      • AT4G00220.1 - [+] show detail - Lateral organ boundaries (LOB) domain family protein
        Distance: -220; Region: promoter
    Flanking Genome Sequence: 52-0135-1 - 5-prime edge 
    GTNAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCC GGATGGAGCG TACTTGTCTC GTGTTAAGCT 
    CTTTGCGTGA AGCAAAACAT TCCATATCTT TCAACTTCTT CATTGTTATT 
    CCCTTTCCTT CACTTTTTCT ACTTCTGGTT TAATTTTATT TTTGTTACAT 
    CGAACCACAC AACTATCTTA TGGTATATAC CAATTGTAAT ATATGAACAT 
    TCAATCTAAT ACTATGAGAA ATTAATTTTA CAAACAAATA AATGTATAAA 
    ATAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 89861 [Map]; Strand: c
      • AT4G00220.1 - [+] show detail - Lateral organ boundaries (LOB) domain family protein
        Distance: -175; Region: promoter
    Flanking Genome Sequence: 52-0135-1 - 3-prime edge 
    GCTCCATCGC GTTGCTTTGA AGTCTTTTTT TTCTTCTTCT TCTTCTTGTC 
    TTAACCTCTT TTTTATTTTT TAGTCTTGGT AATAACAAGA CTAATTAAAT 
    TATTATTTTA CTTTTTTTAT TATCTACCAA CAACCAAACC CTAGTTTTGC 
    TTACGTCCGA TCTCCTCCTT CTCTCTTTTC TTCTCTCCCA AACGTTCCCT 
    TTCTTTTTTT TCTCTAATCA CGAACCAAAA AGCATCATAA TCTCGATGAG 
    TTAAATCCAT GTATCTCAAA ACCCTAATCA CCACTTAGCT AGTAAAAGGA 
    AAGGAAAATA AAAAGGACTT GTGTGGTAGA AAAGGAAGAT GAGCAGTAGC 
    GGAAACCCTA GCAGCAGCAG CGGTGGAGGA GGAGGACCGT GCGGCGCGTG 
    CAAGTTCTTG ANAAGGAAGT GTGTCGCTGG CTGCATCTTC GCTCCTTACT 
    TTGACTCCGA GCAAGGAGCG GCGCACTTCG CGGCGGTTCA CAAGGTGTTC 
    GGAGCGAGCA ACGTCTCCAA ACTCCTCCAC CATGTTCCCG AGCATAAACG 
    ACCAGACGCC GTCGTTTCAA TCTGCTTTGA GGCTCAAGCT CGTCTCANAG 
    ACCCTATCTA CGGCTGCGTC TCTCACATCG TCTCTCTTCA GCAACAGGTT 
    AATTATTCTT TTCATAACGT TTAATTATAT GATTAGTACT ATTTATGATG 
    GGAAATTGCA CAGTTTTAAG TTGATCTACT GTCTCTATAT CGCCCG

AT4G00220.1

Model type
Protein coding
Short Description
Lateral organ boundaries (LOB) domain family protein
Curator Summary
Encodes a protein containing a LOB domain that is expressed in embryos, flower primordium and lateral floral organ boundaries. Overexpression is correlated with activation of STM and KNAT1 and down regulation of PIN1 and reduced auxin transport levels. Ectopic expression in plants results in premature termination of the shoot apical meristem and small, lobed leaves.
Computational Description
JAGGED LATERAL ORGANS (JLO); CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: LOB domain-containing protein 18 (TAIR:AT2G45420.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR