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52-0136-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 9809979 [Map]; Strand: w
      • AT5G27700.1 - [+] show detail - Ribosomal protein S21e
        Distance: -1473; Region: intergenic
      • AT5G27705.1 - [+] show detail - transposable element gene
        Distance: -1790; Region: intergenic
    Flanking Genome Sequence: 52-0136-1 - 5-prime edge 
    ATCCTATATA GGGTTCTATC AACATTCTCG CTCAAACTCT CAACTCTTCT 
    CAACTCTTTG TTACTACTAA TATGTCATTC ACTTGGAATT GTGAAAACTG 
    ACGTTCATTA TCGCATCAAT CACATAATTA GGACGAGACA ACAACACACA 
    ACCGTCTAAT AAAGAATAAA AAGACAATAA TAATAATTTA TCGCCACAAG 
    AATACTTTAC CAAGTGTCAA ATTTGCAAAA TTCAAGGCTA TAGTTCAAAG 
    TGGTGTCCTT AATTATGTTC ATTCTCTCAC TTTGAACATC GCTTCTCTAA 
    TGTACAAACC AATCAATCTT GGCGCCATGG ATTATAATGT TTGTTAGTTG 
    ACCCTCTTAC ATAAATATTA TTGACCCCAC CAAATTTATA TTTAAGTATA 
    TCCCAATTGT TATGTTTGAC ACTAAAACAT GTTATCTCAT CACAAATAAA 
    TATAAAACAG AAAAAGGCTC ATTAAATTAA GTTAAACCTA ATTATCATTT 
    GTCGATGTTA CAAAAAATTA TTTTATTTTT TAACACAAAA CCTTTAATTG 
    TAGTTATATT TGTTTCATTT GTTTATCTTT ATTTTTCATC TTCTTCCTCT 
    TTTTCCCCTA ATCTATATTG CTTTTCTAGC TAACTTCAAT GGAAATTTAG 
    CCATAGTTCA NGATGTGCTA TTGCGCTTAG AGTGTGGTCA CTAGAGAATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 9809863 [Map]; Strand: w
      • AT5G27700.1 - [+] show detail - Ribosomal protein S21e
        Distance: -1357; Region: intergenic
      • AT5G27705.1 - [+] show detail - transposable element gene
        Distance: -1906; Region: intergenic
    Flanking Genome Sequence: 52-0136-1 - 3-prime edge 
    TATAGGATCC TATCGAGATA GTTTGCAAGT ACTTCGACCG ACCAATCTCC 
    TACGTATTTC GTTTATTCAA GAAAACGACA ACTCCACTTT TGATCTTTTA 
    ATGGATGATT TCTATTAAAC TCAAAGGTCT CCTTTAAATA GGAATCAACC 
    TTGGTAAACA ATCAAATCAC ACTAATATGT AGCAATAAAG AAAAACAATA 
    AAACTATGGA AGACAATAAT GAAAAGTCTA TGTTCTTAAC TTTCTAACTA 
    AATGGTTGTC TATTAGAATG ACGGATTTAC TTAGAGCGTT AAGAATATGA 
    GAATTTTTAT GGAATTTTCA TCGTTAAAAA GTGAAAA

AT5G27700.1

Model type
Protein coding
Short Description
Ribosomal protein S21e
Computational Description
Ribosomal protein S21e ; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic small ribosomal subunit, ribosome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S21e, conserved site (InterPro:IPR018279), Ribosomal protein S21e (InterPro:IPR001931); BEST Arabidopsis thaliana protein match is: Ribosomal protein S21e (TAIR:AT3G53890.2); Has 660 Blast hits to 660 proteins in 258 species: Archae - 0; Bacteria - 0; Metazoa - 293; Fungi - 137; Plants - 120; Viruses - 0; Other Eukaryotes - 110 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G27705.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 2.2e-58 P-value blast match to GB:BAA78424 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)gi|4996363|dbj|BAA78424.1| polyprotein (AtRE2) (Arabidopsis thaliana) (Ty1_Copia-element)
Link
InterPro Scan - TAIR