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52-0142-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 6974872 [Map]; Strand: c
      • AT5G20620.1 - [+] show detail - ubiquitin 4
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 52-0142-1 - 5-prime edge
    CTTTNAAAAA CTAACAAAAT CGGTTATACG ATAACGGTCG GTACGGGATT 
    TTCCCATCCT ACTTTCATCC TCTTCGAACG ATTCTCTCTT TCAAGGTACC
    TGTTTCTCTT ATTGTTATTT CTATTTGATT TCGCGTCTGA TCTCTCGTTT
    AGGTCTGTAT GATGTCCTTG GATGATTGAA TCGGGAAATT ATTGATTCCG
    TTTCATCTAT GCNTTTTCTC GATTCTTTGA TTTATGAGTT ATCTCGATTT
    TATGATTTTA GGAATACTAA GATCTCTCAA TTCGTAGTTC GTCAGGTTTT
    TATGTTTGTA GTGATCTTTG TTTTGATAAG AAGTAATATC GTCAATTTCT
    TGTTTGTTTG TGCAATTCTC ATATAAGATT AGGGTTCTAG ATCAGTTCTC
    TGGTTTGTTT TGATTTCTTA TCACAGTTTC TAGTTTGGTT ATTTTTGCTG
    ATCGATTACT ACTTGCTCTC TTCCTTCGCA GATGCAAATT TTCGTGAAAA
    CACTCACTGG TAAGACCATC ACTCTCGAGG TTGAGAGCTC TGACACCATC
    GACAATGTTA AGGCAAAGAT CCAGGACAAG GAAGGCATTC CTCCTGACCA
    GCCCAGANCG ATCNNCNCTC GGNNCCNNCT ANAANATGGC CGCACCTTGG
    CTGATNACNN CNTNCNNAAA GAATCANCAC TCCACTTGGN TCTNANGTAA
    NAGGNGGNNT GCNNATCTTT GNNAANACTC TGACTGGCNN NACCNTTNCC
    NTNGNAGGNN GAAAGCTNTG ACACT
  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 6974881 [Map]; Strand: c
      • AT5G20620.1 - [+] show detail - ubiquitin 4
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 52-0142-1 - 3-prime edge
    NTTAAAACGG NNGAGGTATT TTACNGACCG TTACCGACCG TTTTCATACT 
    GAAGAGCGAT CTAGGTTTTT TTTTACTTTT TTCTGTGAGA GAGATGAAGA
    ATCAGAGCAG AAGATAATAC TTCGCTAGAA AATAGCCTTC TTATATAATG
    GTGACCAAAA CCGAGTTTTA ATTAATTGGC CCAAAAGGCC CAAAGGCCCA
    AAACATTATT TATTTTAAAT TTTTTTGAAC ATCGGCTAAA TAGTTGCTTA
    TTAGTGCAAA TGTCGAGATA TAGTTGACAA GCTACTTANA AATCTGCAAT
    ATAATGCTTA TTAGTTATTA CAATTTGAAG CCAAAGAGAC TATAAAATGA
    AACATTGAGA ACAATAACAA CTCATAAAGA AAAACCAAAT CATTAGAAGA
    AACAAACTCA AAATGCTAAA GGAACTCGAA ATAACAAAAC GCACAACCAC
    ATTTTTAAAA AAATGAACAA TGAAACTAAG AGAAGCT

AT5G20620.1

Model type
Protein coding
Short Description
ubiquitin 4
Curator Summary
encodes a ubiquitin polyprotein.
Computational Description
ubiquitin 4 (UBQ4); INVOLVED IN: protein modification process, protein ubiquitination involved in ubiquitin-dependent protein catabolic process, ubiquitin-dependent protein catabolic process; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin subgroup (InterPro:IPR019956), Ubiquitin conserved site (InterPro:IPR019954), Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: polyubiquitin 10 (TAIR:AT4G05320.4); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR