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52-0144-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 28978948 [Map]; Strand: w
      • AT1G77122.1 - [+] show detail - Uncharacterised protein family UPF0090
        Distance: -205; Region: promoter
      • AT1G77130.1 - [+] show detail - plant glycogenin-like starch initiation protein 2
        Distance: 0; Region: exon3 (3UTR)
    Flanking Genome Sequence: 52-0144-1 - 5-prime edge 
    CGCGTAAGCT TCATCTTCCT GTAAATNCTT TATTTGTCTT TCATTCCTTT 
    ATCCCCCCAT GATTACATTG NTTCTGGGAT TCGTATACAG GTTTCAAGCT 
    GATAATAAAA AAACAAAAGA ACATATCCAA CCCANANTTG GTTGGCGAAA 
    GGCAGAGTAA TTTGTACCAA ACCAGAAAGC CAAAAGAATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 2507816 [Map]; Strand: c
      • AT4G04925.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 1030; Region: intergenic
      • AT4G04930.1 - [+] show detail - fatty acid desaturase family protein
        Distance: -1317; Region: intergenic
    Flanking Genome Sequence: 52-0144-1 - 3-prime edge 
    ATNAAAACGG TAGAGGTATT TTACNGACCG TTACCGACCG TTTTCATCAA 
    CGATCAACAG ATGCTGAAGT AGCAATCGTT ATCAGATTAA GAAGCT

AT1G77122.1

Model type
Protein coding
Short Description
Uncharacterised protein family UPF0090
Computational Description
Uncharacterised protein family UPF0090; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0090 (InterPro:IPR003728); BEST Arabidopsis thaliana protein match is: Uncharacterised protein family UPF0090 (TAIR:AT1G69210.1); Has 3296 Blast hits to 1357 proteins in 179 species: Archae - 2; Bacteria - 148; Metazoa - 1652; Fungi - 253; Plants - 200; Viruses - 109; Other Eukaryotes - 932 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G77130.1

Model type
Protein coding
Short Description
plant glycogenin-like starch initiation protein 2
Computational Description
plant glycogenin-like starch initiation protein 2 (PGSIP2); CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: plant glycogenin-like starch initiation protein 1 (TAIR:AT3G18660.3); Has 1471 Blast hits to 1463 proteins in 343 species: Archae - 0; Bacteria - 240; Metazoa - 259; Fungi - 287; Plants - 508; Viruses - 75; Other Eukaryotes - 102 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G04925.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G04930.1

Model type
Protein coding
Short Description
fatty acid desaturase family protein
Curator Summary
Encodes a sphingolipid delta4-desaturase, involved in sphingolipid biosynthesis. Specifically expressed in floral tissues. Knockout mutants were devoid of sphinga-4,8-dienine in floral tissues.
Computational Description
DES-1-LIKE; FUNCTIONS IN: oxidoreductase activity, sphingolipid delta-4 desaturase activity; INVOLVED IN: sphingolipid biosynthetic process; LOCATED IN: integral to membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Sphingolipid delta4-desaturase, N-terminal (InterPro:IPR013866), Fatty acid desaturase, type 1 (InterPro:IPR005804), Sphingolipid delta4-desaturase (InterPro:IPR011388); Has 703 Blast hits to 697 proteins in 257 species: Archae - 0; Bacteria - 174; Metazoa - 227; Fungi - 120; Plants - 36; Viruses - 3; Other Eukaryotes - 143 (source: NCBI BLink).
Link
InterPro Scan - TAIR