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52-0146-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 13948660 [Map]; Strand: w
      • AT5G35777.1 - [+] show detail - transposable element gene
        Distance: -568; Region: promoter
    Flanking Genome Sequence: 52-0146-1 - 5-prime edge
    CCTCGACATA ACATTATGTA AATACTTTTT GACTAAAAAT AGTACCATTC 
    ACCCTTCTAA CTCTATGTNA ATTTGACTAC AAAAACATTT TGACAAAAAA
    ATGAACGATT ACAAATTACA CTGATGGAAA ATATACTTAG TCGAATAACC
    ACCAACGGTT GAATGTAAAT GTGGAGTTCC AATTATTAAT CATTTTTTTC
    GGCACTCAAT TCACGAATGT GAATCACCAC TAACGCATCT AGGAATATAT
    ATAGTAAGGT ATACAACTTA TTTTTTAATC AAAACAAAAA AATATTTGTA
    GATTTTTGGG ACCTTTGGTT TTCCTTAAAA TAGATAAGGG AATATTGGAG
    GATAGATATG AATCTATATG AATTAGAATT TAAGGTCTTA AATCCCTTTG
    TGATAAGGTT TGGGATACCT ATATTTTAAG ACTATGCTAC
  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 13948544 [Map]; Strand: w
      • AT5G35777.1 - [+] show detail - transposable element gene
        Distance: -684; Region: promoter
    Flanking Genome Sequence: 52-0146-1 - 3-prime edge
    TGTCGAGGAC ATAAAGACTC CACGCATTTA GTTTTGATCA TGTTAAGTTG 
    GAAATAACAA CAAATGGTAA AAACTTGATT ATTCTTAATG TTGGAGATCA
    TGCTATAAAC CTAATGTTGT ACTTGATTTA TAGGCTGTGA GAGAAATCTC
    AGAAATTCTA AAATGAANAT ANATCGTAGG TTTGACAAAT AATTGTACTA
    GAAAGCCACA TGGGGATTAT GGAGGTATTT GTTAAAACCT AATGTTTGAC
    AAATGGAGTT TTTAAATGTA ATTTGAGTTA TGCATAATAT AGCAAGTCTA
    TAAAACTAAA CCAAACAAAA GTTCGGAAGA TTTGCAATAT ATTTAATTTA
    GATTTATCAT TTGGATTTTA TGAGAAGAAT AGTTCTAATA TAAAATTATC
    TAA

AT5G35777.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 2.0e-67 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)
Link
InterPro Scan - TAIR