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52-0158-2

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 54904 [Map]; Strand: c
      • AT4G00140.1 - [+] show detail - Calcium-binding EF-hand family protein
        Distance: -1455; Region: intergenic
      • AT4G00150.1 - [+] show detail - GRAS family transcription factor
        Distance: 2295; Region: intergenic
    Flanking Genome Sequence: 52-0158-2 - 5-prime edge 
    TCTGAAATTG ATGGGTGTGT TTTTGTGTGC ATAACAAAAG TTAAAAATGT 
    ATTTATATTA TTTTTAATTT TAAAATTCTT TTCTTACTTG TGTTTATTTA 
    TTAGTTAAAT AAATAATTTA ATGAGAGAAG CTTTTGATAC AATTTTTACT 
    CTCTTTCAAT CTCCATCTCA ACTTTTGTAG ATGCCAAGCT TGCCCACCAT 
    ATCTGCTCCT CAACCTCTCA CTTTACAAGT ACTTCATTTA TTTTCTTAGT 
    TAGTCTATTT ATTTCAATAA ACAAACTCTA CTCAAGTTCA TCAAGATTCG 
    TAACAGTGGA ATCCTTTATT AATGTTAGAT CATCAAACTC TACACATGTT 
    TATTTCCATC TCTATGCTAC TC

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 55020 [Map]; Strand: c
      • AT4G00140.1 - [+] show detail - Calcium-binding EF-hand family protein
        Distance: -1571; Region: intergenic
      • AT4G00150.1 - [+] show detail - GRAS family transcription factor
        Distance: 2179; Region: intergenic
    Flanking Genome Sequence: 52-0158-2 - 3-prime edge 
    ATTTCAGATC CCTCGCTCTC CACCTTATTA TATATCTTTT TAGGGGGTCG 
    GAATTATATT ACGTACAACC TTTTGTTGGT ATACTCCTCT TCTTCTTCTT 
    CTTTTGTGCA ACCGTATACT CATTTTCTCA AATTCAATGT TTCTAAATTA 
    TATATATTAA ACACACATTT GGTAGTAGCA AACTTGTCGC TTTGGATTTT 
    ATCATTTTAA TTACAGTTCG TATAAATATC TGTTGACCCT TATTAATATG 
    ATTGAACAAA CAACTAATTT GACTAAAATG CGTCATGGTN GANCATGTAT 
    GTT

AT4G00140.1

Model type
Protein coding
Short Description
Calcium-binding EF-hand family protein
Computational Description
embryo sac development arrest 34 (EDA34); INVOLVED IN: polar nucleus fusion; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: calmodulin-related (TAIR:AT1G73440.1); Has 80 Blast hits to 56 proteins in 14 species: Archae - 3; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00150.1

Model type
Protein coding
Short Description
GRAS family transcription factor
Computational Description
HAIRY MERISTEM 3 (HAM3); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor GRAS (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: GRAS family transcription factor (TAIR:AT2G45160.1); Has 2283 Blast hits to 2233 proteins in 293 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 2281; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR