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52-0167-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 21094456 [Map]; Strand: w
      • AT1G56345.1 - [+] show detail - Pseudouridine synthase family protein
        Distance: 0; Region: exon1 (5UTR)
      • AT1G56350.1 - [+] show detail - Peptide chain release factor 2
        Distance: -322; Region: promoter
    Flanking Genome Sequence: 52-0167-1 - 5-prime edge 
    GTNANAAACN AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TCAGGGACAT TTGTATGTAC AGTCTTCTTT CTCTAACCTT 
    TTTAAGTTAT ACGTTTATAA ACACTAACCG AACCGATCCG AACCAAAATA 
    GTACTTAATT AAAAACACCG TACCATATAT ATGGTTTGAG TGTAACTTAT 
    ATCGGATAAA CCGAATCCGA ATCAAATCGA AAACACACTG ATACTCGAAT 
    T

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 21094441 [Map]; Strand: w
      • AT1G56345.1 - [+] show detail - Pseudouridine synthase family protein
        Distance: 0; Region: exon1 (CDS)
      • AT1G56350.1 - [+] show detail - Peptide chain release factor 2
        Distance: -337; Region: promoter
    Flanking Genome Sequence: 52-0167-1 - 3-prime edge 
    TGAAAACGGT AGAGGTATTT TACNGACCGT TACCGACCGT TTTCATCCCT 
    TCGAAACTTC TTCTCCTTCA TCTTCTCTGC AAATTCAATA ATCACAAAAC 
    CCTATTTTGC AATCCCAATC AAAGCCATGG AAGCTACCTC TGAACTCAAT 
    CTCAATTACC CAAAACCCAT ATCAGCTCCT CCACCTCCAA TCTCCAAAGA 
    CATTGAACTC AGAAGAGCAA TGGAAGCT

AT1G56345.1

Model type
Protein coding
Short Description
Pseudouridine synthase family protein
Computational Description
Pseudouridine synthase family protein; FUNCTIONS IN: pseudouridine synthase activity; INVOLVED IN: pseudouridine synthesis, RNA modification; LOCATED IN: endomembrane system; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pseudouridine synthase, catalytic domain (InterPro:IPR020103), Pseudouridine synthase, RsuA and RluB/C/D/E/F (InterPro:IPR006145), Pseudouridine synthase, RluC/RluD, conserved site (InterPro:IPR006224); Has 16985 Blast hits to 16836 proteins in 2654 species: Archae - 12; Bacteria - 12887; Metazoa - 225; Fungi - 200; Plants - 183; Viruses - 0; Other Eukaryotes - 3478 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G56350.1

Model type
Protein coding
Short Description
Peptide chain release factor 2
Computational Description
Peptide chain release factor 2; FUNCTIONS IN: translation release factor activity, codon specific, translation release factor activity; INVOLVED IN: translational termination; LOCATED IN: cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Class I peptide chain release factor (InterPro:IPR000352), Peptide chain release factor 2 (InterPro:IPR004374), Peptide chain release factor (InterPro:IPR005139); BEST Arabidopsis thaliana protein match is: high chlorophyll fluorescent 109 (TAIR:AT5G36170.2); Has 16865 Blast hits to 16865 proteins in 2794 species: Archae - 0; Bacteria - 10325; Metazoa - 292; Fungi - 236; Plants - 212; Viruses - 15; Other Eukaryotes - 5785 (source: NCBI BLink).
Link
InterPro Scan - TAIR