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52-0170-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 10269379 [Map]; Strand: c
      • AT2G24160.1 - [+] show detail - pseudogene, leucine rich repeat protein family, contains leucine rich-repeat ...
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 52-0170-1 - 5-prime edge 
    GTNAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCAAGGAC CATTTCCACA TTGGATCTGC CAGTTTAGAT 
    CGCTGGAGTT TTTAGATTTG TCCAACAATA GCTTCAGTGG CTCAATTCCT 
    CTATGTTTAA GGAATATCAC TTATTCTTTG GAAGTGCTTA ATCTACGAAA 
    CAACAATTTC AGTGGGATTC TTCCAGATGT GTTTCTCAAT GCTACTCGTT 
    TATACACACC TTGATGTTAG CCGCAACCGG TTGGAAGGTA AACTCCCAAA 
    AACCTTGATC AATTGCACAT CCATGGGACT TTTGAATGTG GAAGGAAACA 
    AATTCAAGGA GACGTTTCCA TCTTGGTTGG GTTCTATGCC ATATTTATAT 
    ATCCTCATCC TCCGAGCCAA CCAATTCTAT GGGCCGTTAT ATCACCTCCA 
    CGAATCTACT TGGTTTCAAC ATTTAAAGGT TATTGATGTC TCACATAATG 
    ACTTCACTGG ATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 10269435 [Map]; Strand: c
      • AT2G24160.1 - [+] show detail - pseudogene, leucine rich repeat protein family, contains leucine rich-repeat ...
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 52-0170-1 - 3-prime edge 
    CTTGGANNGA NTTAGACTNA CGACGCANTA CTTGCATTTG TGCTTGANCT 
    GCNACTCGNG ATGATNCTCC ACNACCACTA AAAGAGTTGT GAGAAAGTTG 
    TAGCGATGAC AATCTCAATA AGCAACCTGG GACATTGCCT TGCAACNTTA 
    TTGTTGGAAA TATCTAACGT TCCGAGTTTG ANAAATTGAG ATATGGATTC 
    TGGGATTTGG CCATCGAAAT TGTTATCAGC AAGGTATAGA CTAATAAGAC 
    TAGACGATGA TGGCCATGTA TTCCCAAAAT CTATAGGTCC CTTGAAATTG 
    TTTCGCGCCA AAGTAACCCA TTGTNACGAA GGAATCTTGA ACAAGAATGT 
    TGGGAAAGGC CCGGAAAATG AGTTGTTACG AAGATCTAAT NATTCGAGAT 
    TGAGANATTT AGATATGGAT TCTGGGATCC TTGCCNNCGA AATTGTTATC 
    NNCAAGGTAT AGACTACTAA GACTAGACGA TGATGGCCAT GTNTTCCCAA 
    AATCTATAGG TCCCTTGAAA TTGTTNCGCG CCTAATCAAC CCATTGTAAC 
    GAATGAATCG CGAACNNCGA TGTAGTNAAA ANGCCCGAAA AAGTTTCCCA 
    CCCCCAAATC CCTCCAAGTT GTNGGAATCG GCTCNTGTCC GGTATAAGCC 
    TCGGGTTCAA AGNCCTTTTC TGTGATGTCN AGGTTGGATC AATTTTCGNT 
    AAATTGGCAC CTGANACANC AGATTTGCCA NTTAANAGGN ATATNGAAAA 
    G

AT2G24160.1

Model type
Pseudogene
Computational Description
pseudogene, leucine rich repeat protein family, contains leucine rich-repeat domains Pfam:PF00560, INTERPRO:IPR001611; contains some similarity to Cf-4 (Lycopersicon hirsutum) gi|2808683|emb|CAA05268; blastp match of 37% identity and 8.4e-98 P-value to GP|2808683|emb|CAA05268.1||AJ002235 Cf-4 {Lycopersicon hirsutum}
Link
InterPro Scan - TAIR