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52-0175-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 1042614 [Map]; Strand: w
      • AT4G02370.1 - [+] show detail - Protein of unknown function, DUF538
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 52-0175-1 - 5-prime edge 
    CTCCGACGGC GTATTCACTC CTCCAAAGCT ACAACTTCCC CGTCGGAATC 
    CTTCCAAAAG GAGTCGTAGC TTATGATTTA GACACAACGA CAGGCAAATT 
    CCATGCGTAT TTCAACGATT CATGTAGCCT TCAATCTTGT TGGTTCTTAC 
    CAATTGAATT ACAAATCAAC AATCAGTGGT TACATCTCCG AGAACAAGCT 
    CAAGAAATTG ACTGGTGTTA AAGTCAAAGT TTTGTTCTTG TGGCTTAACA 
    TCGTCGAGGT TATTAGAAAC GGTGACGAGA TGGAGTTTTC CGTTGGGATC 
    ACATCGGCGA ATTTCGCGAT CCAAGAGTTT TTGGAATCGC CTCAGTGTGG 
    TTGTGGCTTT GAGTGCAAGG ATTCGAAATT GGACATGATT GAGAGAAACC 
    CTTTTGTTTC TTCGTCTTGA AATTGAAAAA GGTACAATCT TTTTTTGTAA 
    TTTGTCCCCA AAAAATCTTA CCTTTCGAAA AGATCGCATC TTTTATGTAT 
    TGTCCAATAA TATGAGCGTA GTGTCTGGAA TTTGTAATTG TTTACTTTAG 
    TTCTATTTAT TGGATTCAAG TTCTGTAATG GTGAAAAGAA AAGATACTGA 
    AGGGAGATGT GAACATTGTG AAGTGAACAT TTGTAATCTT AGATTGAATG 
    TTTTCATTTT TGTTCATAAG GTCCTTACTC CTTATTTGTA TTGATTTGGT 
    TTGGATGTGC TGGGAATTAN GATGGANCTN

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 1042498 [Map]; Strand: w
      • AT4G02370.1 - [+] show detail - Protein of unknown function, DUF538
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 52-0175-1 - 3-prime edge 
    CGTCGGAGTA TCGGATTCTA CGGCAGTGAC GGCGACGGCG CGTGAAGAGA 
    GGAAGAGAAA CGAAGCGATT AAAATCGGGA GACGAGACAT TTGGGTTTGA 
    GGAAACAACA AATCGTAGAA GTAAGAATCA AAAGATTTTG ATTTCTCCGC 
    CTGTGGATTT TCGTTTTGCC GTCGGAGACT TTTTGTAATA ATGGTGGTCG 
    TTGAAAATAT CTATCGTTAA GACATAAACG ACGCCGTTTT AGGTAGACAA 
    CTGGACACGT GGTTAGTTTC TACAGGCTGT CAGGTTGTGG TGATGAGACA 
    ATTATTTTGG GAAAAGTTCA CTTACGATAA TAGATAATCA TGAATTAAAT 
    TTTATCAAGA CATTTGTTAA CAAAAAGACA AAAAAATTGC ATACGACTTA 
    TTCTTATAAA AATTCCATGA AAATAGTAAA TAAATTAACT AGAACATTTT 
    TCTTGTTTTT ATGGTCGCTT AAATTTATTT TTTTGGTGTA AAAACTTCAA 
    AGAAATTACT AATGTTAAAC AGAAAGTCAA AAATGGTTAA ATAGTTTCGG 
    GAAGCTCAAA TTGACATGAA GAGAAGGGCA TTTTTCGGTA GGAACTAATC 
    ATACACACAT TAATCAAATT ATTAGTTAAC TAATCAAGAG AAGGGCATTT 
    TTTATTCAGT ACAACTAAAG GCCCAACAGA TTCAAGAAGA AAATAAAAGC 
    CCATTATTAC AATCAAACCC ACAACCACAC TGAGGACTCT CTTCAAAATC

AT4G02370.1

Model type
Protein coding
Short Description
Protein of unknown function, DUF538
Computational Description
Protein of unknown function, DUF538; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF538 (InterPro:IPR007493); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF538 (TAIR:AT1G02816.1); Has 618 Blast hits to 617 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 617; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link
InterPro Scan - TAIR