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52-0176-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 309801 [Map]; Strand: w
      • AT1G01880.1 - [+] show detail - 5'-3' exonuclease family protein
        Distance: -692; Region: promoter
      • AT1G01880.2 - [+] show detail - 5'-3' exonuclease family protein
        Distance: -692; Region: promoter
      • AT1G01890.1 - [+] show detail - pre-tRNA
        Distance: -454; Region: promoter
      • AT1G01900.1 - [+] show detail - subtilase family protein
        Distance: -515; Region: promoter
    Flanking Genome Sequence: 52-0176-1 - 5-prime edge 
    TTAAAAACTA ACAAAATCGG TTATNCTGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCC TACCGGCGGT GGAAGCTGCC TGCATTCCTC 
    GTCCTTCTTC TAAACTACTA CCCGTTTTCT TTTCTTTTTT TCCTATTTAA 
    AACTTTCACG GCCTTTTTTT TCTTTTTCTT TGTATAGAGT AAAGATTATT 
    GCAAAATTCC CACGTCTTAG ATGAAAATTT GCACCTCATA AGACTAGACT 
    TGTTCATTAC GTGTTCCATA TTCTGGTAGG CAAATATTTT TATCATTCAA 
    ACTCTTCTAT AAGTGATATT AATAAAAAGC T

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 309790 [Map]; Strand: w
      • AT1G01880.1 - [+] show detail - 5'-3' exonuclease family protein
        Distance: -681; Region: promoter
      • AT1G01880.2 - [+] show detail - 5'-3' exonuclease family protein
        Distance: -681; Region: promoter
      • AT1G01890.1 - [+] show detail - pre-tRNA
        Distance: -443; Region: promoter
      • AT1G01900.1 - [+] show detail - subtilase family protein
        Distance: -526; Region: promoter
    Flanking Genome Sequence: 52-0176-1 - 3-prime edge 
    NTTAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATAAG 
    GTGGACATTA AATGGAGAGG GAGGGGACAA ACGCAACAAT AATTGGGGCG 
    TGACTTAATA TATTACTCAT ACCATATAAC CAAGTTTTCT TCTATATTTC 
    CTATGATTCA AATCATTGCT TGTTCACACT TCACTCATAA TCCCTTTGTG 
    TACCTGGCCT TTCAAGCCAA GTATGAACAC NGTAAGCCGA CGACTTACAT 
    TTTTTTTTTT TTTTTTTGNG GNCCCCCCCC CTNNAAAANT GGGNAAATTT 
    NNNNGNTTTT TTNTNTTNAA NTAAAACCCC TTTTAAAAAN GGNAANCCCC 
    CNNNTAAAAA GGGGTTNNNG GGGNNTTNNA TTTTTTNCCC CNGGGNCNNA 
    NGNNAANCCC NANTANGGGC CNNNCNTNCC NNTTTTNGGA AAANGNTTTT 
    TGGGNTTTTN NNNAAANAAT NGAAAAANNG CCNGNTTTTT NAAANTTTTT 
    GNNANTTTTA ACCNAAAAAN CCCCTTTNNN NTANTNGGGA AAACCCANGG 
    GTTTNAACCT TNGGGGNGGG GGNTCNANCC CCCNGGGGGG NNAACNGGNA 
    AAAAANNTTT TTTTTTTTTT TTTTTTTNAA AAANNNAAGG GGCCNAAAAA 
    ANTTTNNCCG GGCTNNTTNN GGGGCCCCNA ACCCGGGGGG GGGGNNGGNN 
    AATNCCCTAA AATAANTGGG CCNACAAAAG GGNGTCCCAA AAAAANTCCT 
    TAANGGGGAA AAAATGNTTT TTTCCTTGGG GTTCCNTTTT TTTAATTCCC

AT1G01880.1

Model type
Protein coding
Short Description
5'-3' exonuclease family protein
Computational Description
5'-3' exonuclease family protein; FUNCTIONS IN: DNA binding, catalytic activity, nuclease activity; INVOLVED IN: DNA repair; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: XPG N-terminal (InterPro:IPR006085), DNA repair protein (XPGC)/yeast Rad (InterPro:IPR006084), 5'-3' exonuclease, C-terminal subdomain (InterPro:IPR020045), Helix-hairpin-helix motif, class 2 (InterPro:IPR008918), XPG/RAD2 endonuclease (InterPro:IPR006086); BEST Arabidopsis thaliana protein match is: single-stranded DNA endonuclease family protein (TAIR:AT3G48900.2); Has 2133 Blast hits to 1941 proteins in 373 species: Archae - 274; Bacteria - 9; Metazoa - 492; Fungi - 719; Plants - 217; Viruses - 17; Other Eukaryotes - 405 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G01880.2

Model type
Protein coding
Short Description
5'-3' exonuclease family protein
Computational Description
5'-3' exonuclease family protein; FUNCTIONS IN: DNA binding, catalytic activity, nuclease activity; INVOLVED IN: DNA repair; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: XPG N-terminal (InterPro:IPR006085), DNA repair protein (XPGC)/yeast Rad (InterPro:IPR006084), 5'-3' exonuclease, C-terminal subdomain (InterPro:IPR020045), Helix-hairpin-helix motif, class 2 (InterPro:IPR008918), XPG/RAD2 endonuclease (InterPro:IPR006086); BEST Arabidopsis thaliana protein match is: single-stranded DNA endonuclease family protein (TAIR:AT3G48900.2).
Link
InterPro Scan - TAIR

AT1G01890.1

Model type
Pre-tRNA
Short Description
pre-tRNA
Computational Description
tRNA-Lys (anticodon: CTT)
Link
InterPro Scan - TAIR

AT1G01900.1

Model type
Protein coding
Short Description
subtilase family protein
Curator Summary
Encodes AtSBT1.1, a subtilisin-like serine protease. Cleaves the phytosulfokine AtPSK4, a growth promoting peptide.
Computational Description
SBTI1.1; FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: proteolysis, negative regulation of catalytic activity; LOCATED IN: extracellular matrix, apoplast, cell wall; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Peptidase S8/S53, subtilisin/kexin/sedolisin (InterPro:IPR000209), Peptidase S8, subtilisin-related (InterPro:IPR015500), Peptidase S8/S53, subtilisin, active site (InterPro:IPR022398), Proteinase inhibitor I9, subtilisin propeptide (InterPro:IPR010259); BEST Arabidopsis thaliana protein match is: Subtilase family protein (TAIR:AT5G67360.1); Has 6944 Blast hits to 6289 proteins in 1039 species: Archae - 198; Bacteria - 3931; Metazoa - 46; Fungi - 433; Plants - 1873; Viruses - 0; Other Eukaryotes - 463 (source: NCBI BLink).
Link
InterPro Scan - TAIR