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52-0183-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 8397885 [Map]; Strand: c
      • AT5G24550.1 - [+] show detail - beta glucosidase 32
        Distance: -2583; Region: intergenic
      • AT5G24557.1 - [+] show detail
        Distance: -3658; Region: intergenic
    Flanking Genome Sequence: 52-0183-1 - 5-prime edge 
    CTTGAAGGCA GCTGCAGAGA GAAAAAAAAG AAAAAAAAAA AAAAAAAGGG 
    NCCCCCGGGG GGNGGNTTNN TTTGGNCCCC TTTTNCNNAA NNNNCCCNAN 
    GGGNTTTNCC TTTTTTGGGG NNAAAAAACC NGNNNNAAAN AATNNNTTTT 
    TTTTNNTNGG ANNNNTTTNN NANNAAAAAA NNNCCCNAAN NNNNANTNNT 
    TTTNGGNCCC NTTNNCCNAA AAAAAAAAAA AAATTTNNTT TTTTTTTTTT 
    NNGGGGNNNN NAAAAAANNN NNGGNNCCCC CCCCNNCGGG GGGGGNTTTN 
    AAAAAAAANC CNNNNGGNGA AAAAAAAAAN NNTTTTTTCC CCNNNANCCC 
    NGNAAAANNN GGGNCCCCAA AAAAAAAAAA AAAAAANCCC CCCCAAAAAA 
    AAANTTTTTT TTTTTTTNNA AAAAAAAAAA AAAAAAAAAA NNNTNNNNNN 
    TTTTNNNNGG GGNAAAAAAA NNTTTTTTGN NNANNTTTTT TTTTTTNCCC 
    CCCCCCCNNN AAAAAAAAAN CCNGGGGNNC NNTTNAAANT TTTTTTTTTT 
    TNNGGGGNCN CCCCCCCNNT TTNNAAAAAA ACNCCNNCCN TTTTTTTTNA 
    AAAAAAAAAA AAAAAAAANT TTTTTANNNN NNGGGNCCCC CNNNTNTTTA 
    NNNGGGNNNN TTTTTTTTNN NNNNNNCNCN ANNNNGNNTT TTTTTTTTTT 
    NGNNGNNGNN GGGGNAAAAA AANACNCCCN

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 8398001 [Map]; Strand: c
      • AT5G24550.1 - [+] show detail - beta glucosidase 32
        Distance: -2699; Region: intergenic
      • AT5G24557.1 - [+] show detail
        Distance: -3542; Region: intergenic
    Flanking Genome Sequence: 52-0183-1 - 3-prime edge 
    TTCTATGNTA CTCCACTACT TACGTACGAA ATATATGATG GTTTAGAAAC 
    ACATACGGAT GAGAATGATA TCTAGAAGAG GATAATTTGC CAAGGTAAGA 
    TGTGCAACCG TATCCAACCA GTCCAGATAA GT

AT5G24550.1

Model type
Protein coding
Short Description
beta glucosidase 32
Computational Description
beta glucosidase 32 (BGLU32); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: response to other organism; LOCATED IN: endomembrane system; EXPRESSED IN: synergid; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: beta glucosidase 31 (TAIR:AT5G24540.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G24557.1

Model type
Pseudogene
Curator Summary
Encodes a ECA1 gametogenesis related family protein [pseudogene]
Link
InterPro Scan - TAIR