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52-0184-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 3626198 [Map]; Strand: w
      • AT2G08986.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 0; Region: intron44 (CDS)
    Flanking Genome Sequence: 52-0184-1 - 5-prime edge 
    ACCGGTCATG TGTATGATTG AGTATAACAA CTTAAACCGC AACCCGATCT 
    TAAAAGCCTA AGTAGTGTTT CCTTGTTAGA AGACACAAAG CCAAAGACTC 
    ATATGGACTT TGGCTACACC ATGAAAGCTT TGAGAAGCAA GAAGAAGGTT 
    GGTTNNTGTT TTGGAGTCGA ATATGACTTG ATGTCATGTG TATGATTGAG 
    TATAAGAACT TAAACCGCAA CCCGATCTTA TAAGCCTAAC TAGTCTTTCC 
    TTGTTAGAAG ACACAAAGCC NAAGACTCAT ATGGACTTTG GCTACACCAT 
    GAAAGCTTTG AGAAGCNAGA AGAANGTTGG TTAGTGTTTT GGAGTCNAAT 
    ATGACTTGAT GTCATGTGTA TGATTGAGTA TAAGAACTTA

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 13592595 [Map]; Strand: w
      • AT3G33055.1 - [+] show detail - transposable element gene
        Distance: 8621; Region: intergenic
      • AT3G33058.1 - [+] show detail - transposable element gene
        Distance: -9205; Region: intergenic
    Flanking Genome Sequence: 52-0184-1 - 3-prime edge 
    GTGACATGAC ATCAAGTCAT ATTTGACTCC AAAACACTAA CCAACCTTCT 
    CNTTGCCTNT CAAAGCTTTC ATGGTGTAGC CAAAGTCCAT ATGAGTCTTT 
    GGCTTTGTGT CTTCTAACAA GGAAACACTA CTTAGGCTTT TAAGATCGGG 
    TTGCGGTTTA AGTTCTTATA CTCAATCATA CACATGANAT CAAGTCATAT 
    TCGACTCCAA AACACTAACC AACCTTCTTC TNGCTTCTCA AAGCTTTCAT 
    GGTGTAGCCA AAGTCCATAT GAGTCTTTGG CTTTGTGTCT TCTAACAAGG 
    AAACACTACT TANGCTTATA AGATCNGGTT GCGGTTTAAG TTCTTATACT 
    CAATCATACA CATGACATCA AGTCATATTC GACTCCAAAA CACTAACCAA 
    CCTTCTTCTT GCTTCTCAAA GCTTTCATGG TGTAGCCAAA AGTCCNTATG 
    AGTC

AT2G08986.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G40104.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G33055.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family (Athila), has a 3.2e-282 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)
Link
InterPro Scan - TAIR

AT3G33058.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family (Athila), has a 2.4e-112 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)
Link
InterPro Scan - TAIR