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52-0186-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 7890017 [Map]; Strand: c
      • AT5G23420.1 - [+] show detail - high-mobility group box 6
        Distance: 0; Region: exon1 (CDS)
      • AT5G23420.2 - [+] show detail - high-mobility group box 6
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 52-0186-1 - 5-prime edge 
    AAACGCACCA AAGCAGAGGA AGAGAGTCGA AGCCGAGACT AGCAGCAACA 
    CTTCTACTAC CTTACGTCGC GCTAAAGACG GAAGCGCTTT CGCTCTCTGG 
    TGAGTTCTAC TTGCTTTAAT CTGTTGAATC GACGGAATAT TCTGTTTCGA 
    ATTTAGAGAT CTAGGTTTTT ATTTCAGATT TATTAGGGTT TTACAGCTTT 
    AACGATTGGG TTTCTCATAA GTTTTCTGTG GATTGAATCG ATTACAGTGA 
    AGGATGTAAC AAGAGTGTAG CTGTAGCGCT TATAAGCATG CACAATTGCA 
    GTCTCGATGC TAAGATCAGA GTGAATCTCG GTAATCATCT CTTTGGTTTT 
    CCCCCCTTCT TATTGTATTG TGTGTTTCAT CGTCTCATAG TCTCTGTGTA 
    TTTGGTTGTT GTTGTTGTTG TTCAGAAGCA CAAGTTGTGG AGACACAAGC 
    AGAGGCTAAG AAGAAGCCTG CAGAGAAGTA AGACTCGTCA AGACTTGTTT 
    GTATAGTTTC TGTATGTGAT ATTGAATTAT TTGAATGTTT GTTTTTGTTC 
    CAGGAAGAAG ACAACATCTG ATGGACCTAA GCCAAAGAGA CTTAAGAAAA 
    CCAATGATGA GAAGAAGAGC TCGTCTACTT CAAACAAGCC CAAGCGACCT 
    CTTACCGCTT TCTTTATCTT CATGTAATGN TTTTTGNTCA TACTTGCTTT 
    TTTTANATGG TATATAGNCT CTAG

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 7890133 [Map]; Strand: c
      • AT5G23420.1 - [+] show detail - high-mobility group box 6
        Distance: 0; Region: exon1 (5UTR)
      • AT5G23420.2 - [+] show detail - high-mobility group box 6
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 52-0186-1 - 3-prime edge 
    GTGCGTTTGA AGTTGTCTAT GNTACTCCAC TATCTTCCTT TTTCTCGGTT 
    AAGATCGAAA ATATCTGTGA ATATTTTTCG TGTTCGAGAA TTCGATTCGA 
    TGAGAAACGT TTGAGAGACT CGGTGGAGAA GAAAAGGGAG GAAAATGAGA 
    GGGAAACGAA ACTTGTTTTC TCAGTTATGG CGCCAATCTG ATCCCGCGAT 
    ACTGTGTTTT TAGGCTTTGA CNCG

AT5G23420.1

Model type
Protein coding
Short Description
high-mobility group box 6
Curator Summary
Encodes HMGB6, a protein belonging to the subgroup of HMGB (high mobility group B) proteins. Localized in the nucleus. Binds to supercoiled DNA in vitro. HMGB6 is phosphorylated by protein kinase CK2alpha within its acidic C-terminal domain.
Computational Description
high-mobility group box 6 (HMGB6); CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), High mobility group, HMG1/HMG2 (InterPro:IPR000910); BEST Arabidopsis thaliana protein match is: HMG-box (high mobility group) DNA-binding family protein (TAIR:AT5G23405.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G23420.2

Model type
Protein coding
Short Description
high-mobility group box 6
Curator Summary
Encodes HMGB6, a protein belonging to the subgroup of HMGB (high mobility group B) proteins. Localized in the nucleus. Binds to supercoiled DNA in vitro. HMGB6 is phosphorylated by protein kinase CK2alpha within its acidic C-terminal domain.
Computational Description
high-mobility group box 6 (HMGB6); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages.
Link
InterPro Scan - TAIR