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52-0191-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 8777956 [Map]; Strand: c
      • AT1G24822.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -74; Region: promoter
      • AT1G24880.1 - [+] show detail - UDP-3-O-acyl N-acetylglycosamine deacetylase family protein
        Distance: 0; Region: intron3 (CDS)
      • AT1G24880.3 - [+] show detail - UDP-3-O-acyl N-acetylglycosamine deacetylase family protein
        Distance: 0; Region: exon5 (3UTR)
      • AT1G24851.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -324; Region: promoter
    2. Chromosome: 1; Position: 8800484 [Map]; Strand: c
      • AT1G25054.1 - [+] show detail - UDP-3-O-acyl N-acetylglycosamine deacetylase family protein
        Distance: 0; Region: intron3 (CDS)
      • AT1G25054.2 - [+] show detail - UDP-3-O-acyl N-acetylglycosamine deacetylase family protein
        Distance: 0; Region: intron2 (5UTR)
      • AT1G24996.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -74; Region: promoter
      • AT1G25025.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -324; Region: promoter
    3. Chromosome: 1; Position: 8814862 [Map]; Strand: c
      • AT1G25097.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -74; Region: promoter
      • AT1G25112.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -324; Region: promoter
    4. Chromosome: 1; Position: 8829240 [Map]; Strand: c
      • AT1G25175.1 - [+] show detail - other RNA
        Distance: 0; Region: exon4 (NonCoding)
      • AT1G25180.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -324; Region: promoter
    Flanking Genome Sequence: 52-0191-1 - 5-prime edge 
    GTTGGCTTTA TTACTTTTGA ATTTTAATAA TAGTCTATTT TAACCATAAG 
    TACTAGCATA TACTAAATAA CTTGATCTAC ACAATAAAAT ACAGAAGATT 
    GATTCTCAAA CTATTTCTCT CTCTCTCTCT CACAGAGAAT CTCCAATGGC 
    GGCTCCCGTA GTGGTCGCTC CTGCGATAAA TCTTCAGCAT ATGGACCTAC 
    CTGAAGGAAA TGAAGGTAAT AAAAAACGAT TATATTCTCA GAAGCAAGAT 
    ATAGGGGTAG CGAATTTGGG GTAATAAAGA AATTGAAATT GAAAGTATCA 
    AGAAACATTG GTGAGTTTGG GAATTGGAGG AATGTATTTA AAATTAGAGT 
    AGATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 8800565 [Map]; Strand: c
      • AT1G25054.1 - [+] show detail - UDP-3-O-acyl N-acetylglycosamine deacetylase family protein
        Distance: 0; Region: intron3 (CDS)
      • AT1G25054.2 - [+] show detail - UDP-3-O-acyl N-acetylglycosamine deacetylase family protein
        Distance: 0; Region: intron2 (5UTR)
      • AT1G24996.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -155; Region: promoter
      • AT1G25025.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -243; Region: promoter
    2. Chromosome: 1; Position: 8814943 [Map]; Strand: c
      • AT1G25097.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -155; Region: promoter
      • AT1G25112.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -243; Region: promoter
    3. Chromosome: 1; Position: 8829321 [Map]; Strand: c
      • AT1G25180.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -243; Region: promoter
    Flanking Genome Sequence: 52-0191-1 - 3-prime edge 
    CTTAAAACGG TNGAGGTATT TTACCGACCG TTACCGACCG TACGAGTACA 
    CTAAACTCAG ATTATATTTT CCAAAACTAT TGCTAAAGAA TATCAATACG 
    TACACTAGAT ATAGAAATCG GAATTAGGTA CGTTGTGATC CATTTCAGCT 
    ACTGTTAGGG GTAAGATTTG GGCTTGCTTG GCCCAAGGCC CAAATCCAAG 
    TCAAAGGCCT AAGCAGAATG TTAAGTCAAG AGGGTAGGCT CGTCAAAATC 
    CTGGAGGAGT GTCCTACACG CAGAAGGCTA TAAATACGGA ATAGCATGTC 
    TTGTCAAAGG GGGATTCCGC CGGACACGCA GAGACACAGA GCAGCTCGTC 
    AGCTCACCCG TCCGAAGTAT CCCGCCAGCC GGTCCGTCTC AAGCAGCTCG 
    TCAGCTCACC CGTCTCAAGC AGCTCGTCAG CTCTCCCCTC CGAAGTATCC 
    CGCCAGCCGG TCCGTCTCAA ACAGCTCGTC AGCTCACCCG TCTCAAGCAG 
    ATCGTCAGCT CACCCGTCCG AAGTATCCCG CCAGCCGGTT CGTCTCAAGC 
    AGCTCGTCAG CTCACCCGTC TCAAGCAGCT CGTCAGCTCA CCCGTCTCAA 
    GCAGCTCGTC AGCTCACCCG TATCAAGCAG CTCGTCAGCT CACCCGTCCA 
    AAGTACCTCG TCTGCCCATC CATCTTGAGT AACTCGTTTA CTTCGTCCGT 
    CCGAAGTGTC TCGCCGACCT GCCCGCCCAA AATAACTAAC CTACTCGCAC 
    GTCTCGAGAA GCCATNCAGC TCGTCGCACA TCTGCCGGCT CGTCAATTA

AT1G24822.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G25097.1); Has 12 Blast hits to 12 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G24851.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G25025.1); Has 6812 Blast hits to 2172 proteins in 306 species: Archae - 0; Bacteria - 350; Metazoa - 1330; Fungi - 775; Plants - 255; Viruses - 55; Other Eukaryotes - 4047 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G24880.1

Model type
Protein coding
Short Description
UDP-3-O-acyl N-acetylglycosamine deacetylase family protein
Computational Description
UDP-3-O-acyl N-acetylglycosamine deacetylase family protein; FUNCTIONS IN: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity; INVOLVED IN: lipid A biosynthetic process; CONTAINS InterPro DOMAIN/s: UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal (InterPro:IPR015870), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), UDP-3-O-acyl N-acetylglucosamine deacetylase (InterPro:IPR004463), UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal (InterPro:IPR011334); BEST Arabidopsis thaliana protein match is: UDP-3-O-acyl N-acetylglycosamine deacetylase family protein (TAIR:AT1G25054.1); Has 5321 Blast hits to 5321 proteins in 1417 species: Archae - 0; Bacteria - 2995; Metazoa - 1; Fungi - 0; Plants - 55; Viruses - 0; Other Eukaryotes - 2270 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G24880.3

Model type
Protein coding
Short Description
UDP-3-O-acyl N-acetylglycosamine deacetylase family protein
Computational Description
UDP-3-O-acyl N-acetylglycosamine deacetylase family protein; BEST Arabidopsis thaliana protein match is: UDP-3-O-acyl N-acetylglycosamine deacetylase family protein (TAIR:AT1G25054.1).
Link
InterPro Scan - TAIR

AT1G24996.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24822.1); Has 11 Blast hits to 11 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G25025.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G25112.1); Has 8171 Blast hits to 2608 proteins in 364 species: Archae - 0; Bacteria - 499; Metazoa - 1710; Fungi - 974; Plants - 287; Viruses - 83; Other Eukaryotes - 4618 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G25054.1

Model type
Protein coding
Short Description
UDP-3-O-acyl N-acetylglycosamine deacetylase family protein
Computational Description
UDP-3-O-acyl N-acetylglycosamine deacetylase family protein; FUNCTIONS IN: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity; INVOLVED IN: lipid A biosynthetic process; CONTAINS InterPro DOMAIN/s: UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal (InterPro:IPR015870), UDP-3-O-acyl N-acetylglucosamine deacetylase (InterPro:IPR004463), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal (InterPro:IPR011334); BEST Arabidopsis thaliana protein match is: UDP-3-O-acyl N-acetylglycosamine deacetylase family protein (TAIR:AT1G24880.1); Has 5320 Blast hits to 5320 proteins in 1417 species: Archae - 0; Bacteria - 2992; Metazoa - 1; Fungi - 0; Plants - 57; Viruses - 0; Other Eukaryotes - 2270 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G25054.2

Model type
Protein coding
Short Description
UDP-3-O-acyl N-acetylglycosamine deacetylase family protein
Computational Description
UDP-3-O-acyl N-acetylglycosamine deacetylase family protein; FUNCTIONS IN: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity; INVOLVED IN: lipid A biosynthetic process; CONTAINS InterPro DOMAIN/s: UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal (InterPro:IPR015870), UDP-3-O-acyl N-acetylglucosamine deacetylase (InterPro:IPR004463), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal (InterPro:IPR011334); BEST Arabidopsis thaliana protein match is: UDP-3-O-acyl N-acetylglycosamine deacetylase family protein (TAIR:AT1G24880.1); Has 5321 Blast hits to 5321 proteins in 1417 species: Archae - 0; Bacteria - 2995; Metazoa - 1; Fungi - 0; Plants - 55; Viruses - 0; Other Eukaryotes - 2270 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G25097.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24822.1); Has 12 Blast hits to 12 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G25112.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G25025.1); Has 8171 Blast hits to 2608 proteins in 364 species: Archae - 0; Bacteria - 499; Metazoa - 1710; Fungi - 974; Plants - 287; Viruses - 83; Other Eukaryotes - 4618 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G25175.1

Model type
Other RNA
Short Description
other RNA
Link
InterPro Scan - TAIR

AT1G25180.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G25025.1); Has 8171 Blast hits to 2608 proteins in 364 species: Archae - 0; Bacteria - 499; Metazoa - 1710; Fungi - 974; Plants - 287; Viruses - 83; Other Eukaryotes - 4618 (source: NCBI BLink).
Link
InterPro Scan - TAIR