1. Home
  2. Mutant Lines
  3. 52-0195-1

52-0195-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 16571339 [Map]; Strand: w
      • AT4G34730.1 - [+] show detail - ribosome-binding factor A family protein
        Distance: 0; Region: intron1 (5UTR)
    Flanking Genome Sequence: 52-0195-1 - 5-prime edge 
    GNGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCA AGTAACGAAA CAAGAACAAA TTATCCAGTG 
    TTCTAAGGGT ATAGTAGTCG TTTCACAAAA TCTAGGTGAC GTGGAAGAGT 
    TCAATCCACG AAAACCGGTC CGAGTTTCAA ATTAAACCGA AGTAACTAAA 
    ACGAGAACCG AATTAATTTT TAGTATCAGC CAATACATTT TCGATTCAGA 
    AATTCTGATC AAGTAAATTG CATAAAACAG AGATTTGAAT T

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 16571332 [Map]; Strand: w
      • AT4G34730.1 - [+] show detail - ribosome-binding factor A family protein
        Distance: 0; Region: intron1 (5UTR)
    Flanking Genome Sequence: 52-0195-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    TCAGAGACCT TTTCAAATCC AAAACAGAGG AATATAAGAG ATTAAGGAAC 
    CATTGTGACG ATGCCTAACT TGCTCCACAC CAATCAATCT CACTTCTTCT 
    TCCTCCATCA TCCGCCAATC TACACCGTCA GTTCAAAGAC GCAGGCTTTC 
    CACTTCCCGC AATCAATGGC GCCGGTCAAC CTCCGTACGA ATCTCTCCGT 
    GCGCAGGACC GTACGGTGTA TGGCGAACCC GAGGAGAGTT AAGATGGTGG 
    CTAAGCAGAT AATGAGAGAA CTCTCCGACA TGCTTCTAAC AGACACGGTT 
    TTACAACACG CTGTCTTACC TGAAGCTGCA CTTGGAGCTG ACCGCTACCT 
    CTCTTCTCTC ACCACCATTA GCGATGTTGA AGTCTCTAAT GATTTGCAGG 
    TGATGAGAAA CCCTAATTGG AAACTCTTGT GTAATGTATT CATGTGGGTC 
    TTGCTCTATT TATGCAGCTG GAGTGGAAAT TTAGGGTCTT TCGAAATATT 
    TGATTCCAGA ATTGCTTAAC TTGATCTTTT GATTAAACTT ATGCTATACT 
    GTGGCTTGCA CGGATTGAAT CCTGATTCTT TTATCAGTTT TTGACAGAAG 
    CAATTCGTAT TATGTGTTTT ATGATTTGTG TGCTGGACCT AGCCCGCTGG 
    TTTGAGAGTA TTATTACTTC AGAGTAATGT TAGAAGCTGA AAATGGTTTC 
    TTTTGGGGTT GTAGGTGGTT AAAGTATATG TATC

AT4G34730.1

Model type
Protein coding
Short Description
ribosome-binding factor A family protein
Computational Description
ribosome-binding factor A family protein; FUNCTIONS IN: RNA binding; INVOLVED IN: rRNA processing; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosome-binding factor A, conserved site (InterPro:IPR020053), K homology-like, alpha/beta (InterPro:IPR015946), Ribosome-binding factor A (InterPro:IPR000238); Has 4827 Blast hits to 4826 proteins in 1979 species: Archae - 0; Bacteria - 4129; Metazoa - 5; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 652 (source: NCBI BLink).
Link
InterPro Scan - TAIR