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52-0199-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18015066 [Map]; Strand: c
      • AT4G38510.1 - [+] show detail - ATPase, V1 complex, subunit B protein
        Distance: -65; Region: promoter
      • AT4G38510.2 - [+] show detail - ATPase, V1 complex, subunit B protein
        Distance: 0; Region: exon1 (5UTR)
      • AT4G38510.3 - [+] show detail - ATPase, V1 complex, subunit B protein
        Distance: 0; Region: exon1 (5UTR)
      • AT4G38510.4 - [+] show detail - ATPase, V1 complex, subunit B protein
        Distance: 0; Region: exon1 (5UTR)
      • AT4G38510.5 - [+] show detail - ATPase, V1 complex, subunit B protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 52-0199-1 - 5-prime edge
    ACCANCATAG ATCTCTCTGC TTGCTGTGGC TCCTTTCTTC CTCTACACAG 
    ATCTTTGGAT TCAGAAGAAA GAGGTACGTA CACTCTAAAC AATGTCTTTC
    CCATTTCTCT ACTTGTCGAT TATTCCCATC CATTTGTTAT CTTCGTTTTG
    AATTTGTTGT TAGGTTTTAT GCTCTGAGGG TAAGTAATCC CGTTGATCTG
    ATCGAGAAAT TCATATTGAT AGAGCTCTAA AATTGGGTAA AATGGAACGA
    ATTAAGTAGA TTCACGTCCA TCGCTTTCCT TTGAGTCTCT GATACT
  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18015142 [Map]; Strand: c
      • AT4G38510.1 - [+] show detail - ATPase, V1 complex, subunit B protein
        Distance: -141; Region: promoter
      • AT4G38510.2 - [+] show detail - ATPase, V1 complex, subunit B protein
        Distance: 0; Region: exon1 (5UTR)
      • AT4G38510.3 - [+] show detail - ATPase, V1 complex, subunit B protein
        Distance: 0; Region: exon1 (5UTR)
      • AT4G38510.4 - [+] show detail - ATPase, V1 complex, subunit B protein
        Distance: -12; Region: promoter
      • AT4G38510.5 - [+] show detail - ATPase, V1 complex, subunit B protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 52-0199-1 - 3-prime edge
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATTGG 
    ACTATACATA CATACCACCG ATTTCAATTC AATCAGTTTC ATAACTTTCA
    GCTAATTACA TTTATAGCCT TTTACTTTCC CATATTATCA CATTAATCAT
    TTTCTCATCT TTATACTTTA AAATTTTTGA AGAGAAAAAA AACATATCCA
    ACGTTCTACN TTAATTTGGT ATGATTTTTT TTTATTTATT TAAAACACCT
    AAGTTATAAG AAAACCTAGT TNGGTAAGAT TTATTTTGTC CCGCTATTTT
    TAGATTTTAC AGAAAATTAT GGTCTTTTAG AAAATCATAA GTTTACTAAT
    TAGTAATTAA TACAAAATAG TATTTATCAA AATTTAATAA TTTTCTTTAA
    TTTTTTTCAA AAAAGAAAAG AATAAATCAA GTATTGATNG ATATATGTGT
    TAAACTCTTT GCTATTTGCA TTTCCGAGAG ATTTAATAAT GAGAGAAAAA
    ATCTAAAAAT TTCATTTTAA GAAAAGTTGA AAACTCTCAG GCGAGATTAT
    ATGAGAGCTG AGACTTATTG ATTGGGTTCA GAACACAACT GCATACCAAA
    GGCCATGGGG TTTTGTAAGG CCATGGTCTG AGAATAAGCT GAGTTTCTCT
    AGTCTGAATC AGTAATACCT TAAAAAGCAA GCATGAAAAT TAATGAAGAA
    GAAGAAGAAT T

AT4G38510.1

Model type
Protein coding
Short Description
ATPase, V1 complex, subunit B protein
Computational Description
ATPase, V1 complex, subunit B protein; FUNCTIONS IN: hydrogen ion transporting ATP synthase activity, rotational mechanism, hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, proton-transporting ATPase activity, rotational mechanism, ATP binding; INVOLVED IN: proton transport, ATP metabolic process, ATP synthesis coupled proton transport; LOCATED IN: plasma membrane, vacuole, membrane, chloroplast envelope; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, alpha/beta subunit, nucleotide-binding domain, active site (InterPro:IPR020003), ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal (InterPro:IPR000793), ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal (InterPro:IPR004100), ATPase, alpha/beta subunit, nucleotide-binding domain (InterPro:IPR000194), ATPase, V1 complex, subunit B (InterPro:IPR005723); BEST Arabidopsis thaliana protein match is: ATPase, V1 complex, subunit B protein (TAIR:AT1G76030.1); Has 40414 Blast hits to 39266 proteins in 9675 species: Archae - 969; Bacteria - 20976; Metazoa - 1668; Fungi - 811; Plants - 8180; Viruses - 0; Other Eukaryotes - 7810 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G38510.2

Model type
Protein coding
Short Description
ATPase, V1 complex, subunit B protein
Computational Description
ATPase, V1 complex, subunit B protein; FUNCTIONS IN: hydrogen ion transporting ATP synthase activity, rotational mechanism, hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, ATP binding, proton-transporting ATPase activity, rotational mechanism; INVOLVED IN: proton transport, ATP metabolic process, ATP synthesis coupled proton transport; LOCATED IN: plasma membrane, vacuole, membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, alpha/beta subunit, nucleotide-binding domain, active site (InterPro:IPR020003), ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal (InterPro:IPR000793), ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal (InterPro:IPR004100), ATPase, alpha/beta subunit, nucleotide-binding domain (InterPro:IPR000194), ATPase, V1 complex, subunit B (InterPro:IPR005723); BEST Arabidopsis thaliana protein match is: ATPase, V1 complex, subunit B protein (TAIR:AT1G76030.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G38510.3

Model type
Protein coding
Short Description
ATPase, V1 complex, subunit B protein
Computational Description
ATPase, V1 complex, subunit B protein; FUNCTIONS IN: hydrogen ion transporting ATP synthase activity, rotational mechanism, hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, ATP binding, proton-transporting ATPase activity, rotational mechanism; INVOLVED IN: proton transport, ATP metabolic process, ATP synthesis coupled proton transport; LOCATED IN: plasma membrane, vacuole, membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, alpha/beta subunit, nucleotide-binding domain, active site (InterPro:IPR020003), ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal (InterPro:IPR000793), ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal (InterPro:IPR004100), ATPase, alpha/beta subunit, nucleotide-binding domain (InterPro:IPR000194), ATPase, V1 complex, subunit B (InterPro:IPR005723); BEST Arabidopsis thaliana protein match is: ATPase, V1 complex, subunit B protein (TAIR:AT1G76030.1); Has 40414 Blast hits to 39266 proteins in 9675 species: Archae - 969; Bacteria - 20976; Metazoa - 1668; Fungi - 811; Plants - 8180; Viruses - 0; Other Eukaryotes - 7810 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G38510.4

Model type
Protein coding
Short Description
ATPase, V1 complex, subunit B protein
Computational Description
ATPase, V1 complex, subunit B protein; FUNCTIONS IN: hydrogen ion transporting ATP synthase activity, rotational mechanism, hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, ATP binding, proton-transporting ATPase activity, rotational mechanism; INVOLVED IN: proton transport, ATP metabolic process, ATP synthesis coupled proton transport; LOCATED IN: plasma membrane, vacuole, membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, alpha/beta subunit, nucleotide-binding domain, active site (InterPro:IPR020003), ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal (InterPro:IPR000793), ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal (InterPro:IPR004100), ATPase, alpha/beta subunit, nucleotide-binding domain (InterPro:IPR000194), ATPase, V1 complex, subunit B (InterPro:IPR005723); BEST Arabidopsis thaliana protein match is: ATPase, V1 complex, subunit B protein (TAIR:AT1G76030.1); Has 40414 Blast hits to 39266 proteins in 9675 species: Archae - 969; Bacteria - 20976; Metazoa - 1668; Fungi - 811; Plants - 8180; Viruses - 0; Other Eukaryotes - 7810 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G38510.5

Model type
Protein coding
Short Description
ATPase, V1 complex, subunit B protein
Computational Description
ATPase, V1 complex, subunit B protein; FUNCTIONS IN: hydrogen ion transporting ATP synthase activity, rotational mechanism, hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, ATP binding, proton-transporting ATPase activity, rotational mechanism; INVOLVED IN: proton transport, ATP metabolic process, ATP synthesis coupled proton transport; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal (InterPro:IPR000793), ATPase, alpha/beta subunit, nucleotide-binding domain, active site (InterPro:IPR020003), ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal (InterPro:IPR004100), ATPase, alpha/beta subunit, nucleotide-binding domain (InterPro:IPR000194), ATPase, V1 complex, subunit B (InterPro:IPR005723); BEST Arabidopsis thaliana protein match is: ATPase, V1 complex, subunit B protein (TAIR:AT1G76030.1).
Link
InterPro Scan - TAIR