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52-0200-2

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 14117722 [Map]; Strand: c
      • AT5G35965.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 52-0200-2 - 5-prime edge 
    GTNAAAAACT AACAAAATCG GTTATACTGA TAACGGTCGG TACGGGATTT 
    TCCCATCCTA CTTTCATTTA ATTATCACTA AACCTTCACC TGATCATCAT 
    GATTTTGGAT CTTGGTCTCG TTGCAATGAT ATGGTAGCAA CATGGTTAAT 
    GAATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 13938616 [Map]; Strand: w
      • AT5G35770.1 - [+] show detail - Transducin/WD40 repeat-like superfamily protein
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 52-0200-2 - 3-prime edge 
    CTTCTTACAT TTGATATATC ACACATTAAA ATACAAAAGT GATATTCTGA 
    ATCTGGTCAT CTTAGAACTC AGGAATATTT GAACTACTTT CTTNCCCTTC 
    TTATTTGAAG TATATCATAT TGATGTGANT GGTAATTTGC ATAATAATAA 
    ATAGGATTTG CCATTCCATC ATATGTTATT TGTTGTACTA ATCTATTTTA 
    TGTTACATTT CGTGCCCTAG TGCCTAGATT ATTCTTTTTT TATAATGATT 
    ATCTGACTAA TAGACATTAA ACCTTTGGTT TGACAAGATA TCTTTTCTTT 
    TCGTATAGAA TTCGAAATAT TTGTTTTTAG GTTGTACTAT AGAGCTAGAG 
    TACGAAGTCA AATACATTAC TTTGCGTTTA ATGAGGAATA AAGATGTACA 
    ATAAATAACA ATATAAACGT AAATGT

AT5G35770.1

Model type
Protein coding
Short Description
Transducin/WD40 repeat-like superfamily protein
Curator Summary
A recessive mutation in the Arabidopsis STERILE APETALA (SAP) causes severe aberrations in inflorescence and flower and ovule development.
Computational Description
STERILE APETALA (SAP); FUNCTIONS IN: transcription regulator activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: flower development, megasporogenesis; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G35965.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 5.9e-244 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)
Link
InterPro Scan - TAIR