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52-0214-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 8525582 [Map]; Strand: c
      • AT5G24820.1 - [+] show detail - Eukaryotic aspartyl protease family protein
        Distance: 285; Region: intergenic
      • AT5G24825.1 - [+] show detail - MIR169B; miRNA
        Distance: -1887; Region: intergenic
    Flanking Genome Sequence: 52-0214-1 - 5-prime edge 
    AACTTCTTGC ATGCATATCC ACAACTTATT CTACAAAGTG ACTTAGTGAT 
    AATTGGCAAA TTGACCATTA TAAATGTTTT AATGGTAAGA ATACAACTTC 
    TGATCTCGGG TAAGACACAA GTCGAGATCC ATGGTTATAT TGTTTACTTG 
    TCCGGTAAAT ATTTCTGAAA AGTGTCAACT TCGAATTTTT GAAAATTTGC 
    TATTTTAATT TGTGCCAGTT TATTAAGTTG CAATGCTCTA CGTCGCAAGT 
    TGGAATAACA AAATAAACAT GAACATTGTC ATGTATGATA ATGTCTACAA 
    ATATTTATAA CAATTATTTG GATAATAAAA AGACTAATTA AAACTCAAAA 
    AGTTTACTAC ATACCATCTA CGAAATCGGC CAAACAATCC CTTTGTTGAA 
    AGGCAAGCAT CCTCTGTGAA GTGTC

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 8128907 [Map]; Strand: w
      • AT5G24050.1 - [+] show detail - Domain of unknown function (DUF313)
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 52-0214-1 - 3-prime edge 
    GAGAGACCCA CCAAACCCTA ATTTCCCATG TACTATGTCT TTGTGCCTAA 
    TGGAGAACAC AAGCCGCAAG AGACGTGCTG TGGAACAAAG GAAGCGTAGT 
    GGTGGAGTCA AGAAAGCAAA TGTTGCTCCT TTTTCACAAA CGGCGAGAGA 
    GACACCTGAG TGGCTTGTCA AGGTGATGAC AAACATGAAA GAAGCCAAAG 
    ACGCTAAATT GATCTTTGAG AAGACTCTGT TCGTGACTGA TGTAAACCCA 
    ACAAAGAACC GTCTCTCAAT GCCTTTCAAC AACTTACTCC GAAACGATTT 
    CCTGACGTCT GTGGAGTCCA TAATCATAAA CGAAGACATC AACAACAATA 
    AGAAGATTGG AGTGGGAGCG ATTCTCGTGG ATCAACGGTG TAA

AT5G24050.1

Model type
Protein coding
Short Description
Domain of unknown function (DUF313)
Computational Description
FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF313 (InterPro:IPR005508), Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF313) (TAIR:AT3G24850.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G24820.1

Model type
Protein coding
Short Description
Eukaryotic aspartyl protease family protein
Computational Description
Eukaryotic aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, flower, seed; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Peptidase aspartic (InterPro:IPR021109), Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461); BEST Arabidopsis thaliana protein match is: Eukaryotic aspartyl protease family protein (TAIR:AT2G35615.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G24825.1

Model type
miRNA
Short Description
MIR169B; miRNA
Curator Summary
Encodes a microRNA that targets several HAP2 family members. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: CAGCCAAGGAUGACUUGCCGG
Link
InterPro Scan - TAIR