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Mutant Lines
52-0235-1

52-0235-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 2; Position: 192943 [Map]; Strand: c
- AT2G01430.1 - [+] show detail - homeobox-leucine zipper protein 17
  Distance: -2574; Region: intergenic
- AT2G01440.1 - [+] show detail - DEAD/DEAH box RNA helicase family protein
  Distance: 758; Region: intergenic

ACTATGCCGG CTTTTAATCC CTGTTTTGTT AACTACTATA GTTTAAGAAT 
CCCTTAATTG AAACCTGCTT ATGAGTAGCA AAAGAAGATG AAATAGGTAA 
CAAGAGGTTT GGATCCAAAG AGTAGAAAGA AAATGATTAA GAGACAANAC 
AGAAACTTTT TTGACTTTAG AAGATAGCGA TGTCGGAAGT TAAATCTGTG 
TACGTCCCAA GACGAATGAT TTGCTCATCG GAAGCTACAA AAGCTGTTTG 
TNCNAATTGG GGATCATTCT CTTTTTCGTT TTCTATAATA CCTAATATTT 
TATACTATGC TCTTTCAAAT TATTTGCTCC TTCCGTTTCC ATGACACTAA 
TAATTTGAAG CTTTAAATAA AATCC

3 prime edge [+] show sequence

Chromosome: 2; Position: 193059 [Map]; Strand: c
- AT2G01430.1 - [+] show detail - homeobox-leucine zipper protein 17
  Distance: -2690; Region: intergenic
- AT2G01440.1 - [+] show detail - DEAD/DEAH box RNA helicase family protein
  Distance: 642; Region: intergenic

GGCATAGTTA TGTGTGATTT ATAACTTTTG GTCTTGTAGT GTTCAAATTA 
AACATGAGAA TTGTCTTTTC ATGATTGTCT TTATCAACCC ACCTCCCATG 
CTAGTTTCTC ATGTATGTGT ATATATCAAA ATATTTGCCG ACCAACACCA 
ATTATTATAC ATATAATAAC AAAAAGACAC CAAAAACATG TGAATATTTT 
GTATATGGTT CAATCTCAAA CATGATCTTT GATTATACAA ATATATGTTT 
GATCCCTGAT AAACTCGATA CAATCTCTAG ATTTAGCTAC AATGGAGTGT 
TAAGACACAC ACAACGAAGA CGCAGGAGAA TGATTAAGGC ACGAGCAGTG 
TCAATGAGAT GTGGAACAAG TTGCCAACAC TACAAGTTTC AATATGGAAG 
AGAAAGAACA AAGGAGGAGA CAAGGAGGTT AGTGGGTCCA CTGTTTGATG 
ATTGGGTAGG AAACATTTAG TGGGCCACCA CTTGTCTCTT TGTCCCTCCC 
ATCGTGAATC AATCTCCTCA TTGGTTGCTA CACAAAAAAA GAAACTCCTG 
TGGGTNGGTC ACTCGCCATT CCTTATTCCT CTATTACCAC TTTCTATATT 
TCTTGACACT CCACAAAACT CTTCTATAAA CTNAGTNAGA AGCATAAAGN 
CTACCACTAA TTTTTCTGCT TTNGTAGATC CCATTAGTTC ACGTCCTATN 
NAAAGGCNTT CAAATGGCCA AGTCATACAT NAAATGGGAC TTTAAGTAT

AT2G01430.1

Model type: Protein coding
Short Description: homeobox-leucine zipper protein 17
Computational Description: homeobox-leucine zipper protein 17 (HB17); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Leucine zipper, homeobox-associated (InterPro:IPR003106), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: homeobox-leucine zipper protein 18 (TAIR:AT1G70920.1); Has 8030 Blast hits to 8017 proteins in 519 species: Archae - 0; Bacteria - 0; Metazoa - 5631; Fungi - 276; Plants - 1985; Viruses - 4; Other Eukaryotes - 134 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G01440.1

Model type: Protein coding
Short Description: DEAD/DEAH box RNA helicase family protein
Computational Description: DEAD/DEAH box RNA helicase family protein ; FUNCTIONS IN: ATP-dependent DNA helicase activity, helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding; INVOLVED IN: DNA repair, DNA recombination; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), DNA helicase, ATP-dependent, RecG (InterPro:IPR004609), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEAD/DEAH box helicase, putative (TAIR:AT3G02060.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR