1. Home
  2. Mutant Lines
  3. 52-0269-1

52-0269-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 17486655 [Map]; Strand: c
      • AT1G47580.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: 192; Region: intergenic
      • AT1G47590.1 - [+] show detail - pseudogene, purine permease family protein, contains similarity to purine per...
        Distance: 36; Region: intergenic
    Flanking Genome Sequence: 52-0269-1 - 5-prime edge 
    GAAATAGCAA GCCGNACTGA ATTAGTAAGA GTATGATTAA TGATTTGTNT 
    GTATAATTGT GATCCTATNT ATTTAGTGTT TGTCCATTTC NCTGATGCCT 
    NNCNAAGAGA TCAAGTTTGA GTAAATATGT TTGTTAGAGA GTTGGCAGAT 
    AATCTCCACA AGAGCAGCTA CTATCTCTAA AATGATGAAA CGTCTTGTTA 
    TCTCTTACAA TGATCTATCT ATCTTCAATA CTCGATGATA AATAAACGTT 
    TGAGGAAAAA GCATTGGAAG TTGCATAAAT GGCTTATG

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 17486771 [Map]; Strand: c
      • AT1G47590.1 - [+] show detail - pseudogene, purine permease family protein, contains similarity to purine per...
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 52-0269-1 - 3-prime edge 
    GCTATTTCCT GTTTCTTAAT AGCCTTGTAC AAGGAATATA CATAAGATGC 
    AAACCCAAGG ATCCCAGCTA ACAGAGCTCC TCCCTTAAAC CATCCAATGT 
    CGTCATCCAT AAACCGAAAC GCCAACACAA CGAAAATGTT CGCTACAGGT 
    GTCGCGGAGA AGCTGACNAC ATTAGAGAAA AGGGAAGAAG CCAAACACAC 
    AAGACCCACA AGCCCTAAAG ACATTACTTG CCATGCAAGT GATAATCCGA 
    TAAGACTCAA AACGTAAAGT GGCTTCCCCG TTTTAAACGT CTCGAAATCT 
    TCCTTGATAT CTCTGCTTCT CCTCTAA

AT1G47580.1

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR) superfamily protein
Computational Description
Pentatricopeptide repeat (PPR) superfamily protein; BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G15690.1); Has 7703 Blast hits to 7698 proteins in 1705 species: Archae - 17; Bacteria - 3148; Metazoa - 102; Fungi - 130; Plants - 2368; Viruses - 0; Other Eukaryotes - 1938 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G47590.1

Model type
Pseudogene
Curator Summary
Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane.
Computational Description
pseudogene, purine permease family protein, contains similarity to purine permease (Arabidopsis thaliana) GI:7620007, also similar to Ras-related proteins Rab11C SP|Q40193 from (Lotus japonicus), Rab 11A SP|Q96283 {Arabidopsis thaliana}, Rab2BV SP|Q39434 {Beta vulgaris}; contains Pfam profile PF03151: Domain of unknown function, DUF250; blastp match of 24% identity and 1.9e-12 P-value to GP|21644687|dbj|BAC01243.1||AP004363 putative purine permease {Oryza sativa (japonica cultivar-group)}
Link
InterPro Scan - TAIR