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52-0277-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 17944509 [Map]; Strand: c
      • AT4G38290.1 - [+] show detail - Haemolysin-III related integral membrane protein
        Distance: 462; Region: intergenic
      • AT4G38300.1 - [+] show detail - glycosyl hydrolase family 10 protein
        Distance: 47; Region: intergenic
    Flanking Genome Sequence: 52-0277-1 - 5-prime edge 
    CGGTTTAGTT CAGTTTGCAA TTTGAATCTG GTTTTGGTTA CAATTTTTAG 
    CCGGTTTATT AACGGTTTTT CGAATTGATT TTGGCTGAAA TACGGTATGT 
    CCGTTAGGAT GATAAAATAC ATTCTCTTGG CTCTTTCGAA TTGATTTCTC 
    TTCCAAGTTG TACCTCTCTG NTTCTCCTCT AAA

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 1618 [Map]; Strand: w
      • AT5G01010.4 - [+] show detail - EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAI...
        Distance: 0; Region: exon15 (CDS)
      • AT5G01010.1 - [+] show detail - CONTAINS InterPro DOMAIN/s: GOLD (InterPro:IPR009038); Has 172 Blast hits to ...
        Distance: 0; Region: exon14 (CDS)
      • AT5G01010.2 - [+] show detail - EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAI...
        Distance: 0; Region: exon15 (CDS)
      • AT5G01010.3 - [+] show detail - EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAI...
        Distance: 0; Region: exon14 (CDS)
    Flanking Genome Sequence: 52-0277-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTCCAGTGG 
    AAACTACAAA CTTGTTTGGG ATAATTCATA TTCAACTTTC TTCAAAAAGG 
    TAGGGCGATA TTTACATTTT GGGGTAGACG GAGTAAATCA GTAACCCATT 
    TTTCCATTGC GTTCATTAAT TTGGATCTTT GCATTGGGCC GTTTCTTTTC 
    CTCTGTGAAA GACTCTTCGA TATAAGGTGG ATTGCATAGC ACCAGTAGTG 
    GAGCCGGATC

AT4G38290.1

Model type
Protein coding
Short Description
Haemolysin-III related integral membrane protein
Computational Description
Haemolysin-III related integral membrane protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; CONTAINS InterPro DOMAIN/s: Hly-III related (InterPro:IPR004254); BEST Arabidopsis thaliana protein match is: heptahelical protein 4 (TAIR:AT4G37680.2); Has 1144 Blast hits to 1144 proteins in 198 species: Archae - 0; Bacteria - 18; Metazoa - 607; Fungi - 265; Plants - 172; Viruses - 0; Other Eukaryotes - 82 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G38300.1

Model type
Protein coding
Short Description
glycosyl hydrolase family 10 protein
Computational Description
glycosyl hydrolase family 10 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 10 (InterPro:IPR001000), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase family 10 protein (TAIR:AT4G38650.1); Has 1908 Blast hits to 1902 proteins in 430 species: Archae - 10; Bacteria - 1128; Metazoa - 20; Fungi - 351; Plants - 265; Viruses - 0; Other Eukaryotes - 134 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G01010.1

Model type
Protein coding
Computational Description
CONTAINS InterPro DOMAIN/s: GOLD (InterPro:IPR009038); Has 172 Blast hits to 172 proteins in 43 species: Archae - 0; Bacteria - 0; Metazoa - 95; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G01010.2

Model type
Protein coding
Computational Description
EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: GOLD (InterPro:IPR009038); Has 85 Blast hits to 85 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 20; Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G01010.3

Model type
Protein coding
Computational Description
EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: GOLD (InterPro:IPR009038); Has 76 Blast hits to 76 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 11; Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G01010.4

Model type
Protein coding
Computational Description
EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: GOLD (InterPro:IPR009038).
Link
InterPro Scan - TAIR