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52-0287-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26503051 [Map]; Strand: c
      • AT5G66340.1 - [+] show detail - unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae ...
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 52-0287-1 - 5-prime edge 
    CTCAGGTCCA CAGCATCAAG CTTTCCAAAC CGAATTTTTA ATTTGAGTGT 
    CGCAGGCTCG CTGCATAAAG AGAAGACGAC ACTGTAGTCC TCAGTGACCA 
    AATAATGAAG TAGCCCAAAA CTAAGCCATG CTGTTGCTGG GTAAAACAAA 
    ACTACTAAGC CCTAGAGGTA TGGGCCTCTG TTTTTCTCTC TCCATGAGAC 
    TCACGAGCAA ATCACATAAC TAACTTTGGA TACATTCGAC TCTGTTCCTG 
    ATCCACTCTT CTCTCCCCTG TTTGTCTTTC TCCATTATCT CTTCTTCCGG 
    AGACTGGAAA GATGGCATTG GGCAACAAAC GCACTTCGTC GA

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26503167 [Map]; Strand: c
      • AT5G66340.1 - [+] show detail - unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae ...
        Distance: 14; Region: intergenic
      • AT5G66350.1 - [+] show detail - Lateral root primordium (LRP) protein-related
        Distance: 1300; Region: intergenic
    Flanking Genome Sequence: 52-0287-1 - 3-prime edge 
    GACCTGAGGC TTCTGTTTTN TCCCCTTGAA ATGCAATGAT GGAATTGCAA 
    ATTGTCCCTC AGACGTGTTA CTCTCTTATT GGTTCACAGT GAAATTTCCT 
    AAGGCCCCAC GTTGCGTTCG GAGTTTAAAG TTGCCTGCTT TTATCACCAT 
    CCGACATCCG TCTTCAAGAT CCTTTCTACG TGCAACAACA TCAAACTCTT 
    GAGTCTTGCT TGACCAAGAA AATAAAAAGC AACTTAGGTT TTCCAAAAGA 
    GAAATTTCGA AGACATGGTG CGAGTAGTAC GGAGGAAATA ATCGGGGACA 
    AATCAGCATA AGCAAGGTGG GATTAGCTGT TTAAGGTTTA ATGGGACCAA 
    TTCAATTATA GAATGATATA AATGTAAATC ACAAAATGCA TGATTTGTGT 
    GCATCTTTTT TACAAGTCTT CACAACTCCA TGCAACACTT AATTAAATTT 
    NAATCCTAAT GAGTNATTAT ANTGTTAGCT CGTTTTCCGA TTCTTTTTGC 
    ATCTNAGTNA TCATCATGGC TTTCTTGAGG TGACGTAAAT TGAATAATGA 
    AAAANAGANC CTANGAAATG AATTGGGAAA NAANAGTTTT TTTAGGTCCA 
    AACATAAACA CCTTGCAGAA ATAAAGATGC NTACCAATTT ACACCTTTTT 
    CTGTTNCCCC ACTCACTCAT AANNCTGCNG AATTTACNGC TCTNNTTCGG 
    TGTAACAAAN GAATCAAAAT ACANTTACNG TCTCACTGNT NGNNCAAATN 
    T

AT5G66340.1

Model type
Protein coding
Computational Description
unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66350.1

Model type
Protein coding
Short Description
Lateral root primordium (LRP) protein-related
Curator Summary
A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis. Shi mutant is dominant, has dwarf phenotype. Loss of function mutations have no observable phenotype. Putative zinc finger protein. Involved in the response to gibberellic acid.
Computational Description
SHORT INTERNODES (SHI); CONTAINS InterPro DOMAIN/s: Lateral Root Primordium type 1, C-terminal (InterPro:IPR006511), Zinc finger, Lateral Root Primordium type 1 (InterPro:IPR006510), Protein of unknown function DUF702 (InterPro:IPR007818); BEST Arabidopsis thaliana protein match is: Lateral root primordium (LRP) protein-related (TAIR:AT3G51060.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR