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52-0307-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 4276152 [Map]; Strand: c
      • AT5G13330.1 - [+] show detail - related to AP2 6l
        Distance: 1492; Region: intergenic
      • AT5G13340.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 1787; Region: intergenic
    Flanking Genome Sequence: 52-0307-1 - 5-prime edge 
    CNNGAAAAAC TAACAAAATC GGTTATACGA TAACATATAG ATGCATGTAT 
    ATTATTTTTT TATTAACCAA AAAATTTTGA ATTTAGATCC ATGAACATGT 
    ATGTATTTTT TAGTATTATT TGATAAAATG AACTGTAAGT AATATGGATT 
    ATTTTTTTTG TAAAAAAGTA ATATGGAATA TATTGCAGAA ACTATTCTGA 
    GACGATCACN GAGGGAAGGC CAATCAAACT CGA

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 3011529 [Map]; Strand: c
      • AT5G09710.1 - [+] show detail - Magnesium transporter CorA-like family protein
        Distance: -541; Region: promoter
      • AT5G09711.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: -382; Region: promoter
    Flanking Genome Sequence: 52-0307-1 - 3-prime edge 
    ACCCTAGTTC ATATAGTTAC CTCATATTTC TAAGTAACTA CACTATAGCC 
    AAACATAAAT GTGAAACGGA AGCACTCAAT CGTCAGCGAA CTTGAGAGCA 
    AAATACAATA CGACGGTACG GTATCAGCAT AAACNGTGAA TTAATGGAAC 
    CGCATATTTA AAAAAATCAT AACTGGATAA GGTTTCAAAA AAAGAATTGT 
    TGCGCAATAA ACGAGTTTTT TTGTTTATTA CAATAAACGA GTATCAATTC 
    CTTCCATCGT CAAAAACCAA AGAGCTTTTT GTACCGAGCG AACGACATTA 
    TAATCACGAA CAAGATTGCG CAAACTGTTG CAGTGCCGCT CACCACCTTT 
    CAAATAAAAA CAAAAAACAC CAACTATATC AGGGTCCCGG AAATTCGAAA 
    GGACTAACAG GTCCATGGAA TTGAAGTGTT ATTTCATACC CATTTGAACA 
    TATGTTTTTT GATGTTCCAC GGGAAAGGAA TGTTCATGCC TAGAATGCCA 
    ACAACTACAG AGTACACTGA TACACAGATG CTTCCAGCGG TTAAAATAAT 
    TTCGAACTGA TACAAGTGAG ACGAAGATGA AGATTAGCAC TTGTGGTTTT 
    GATTTTTTAT CTAAGAACTA ATTCAACAAT CTTGGAATTT CTATATTCAC 
    TCACCTTAAT TAGCTGATTT CGACTACTGT CTAGCTGCAA GATACCGGAT 
    GGTTATAATT TACATTTATT AGTAAACAAG AGAGATACAT TTTCACATAA 
    N

AT5G09710.1

Model type
Protein coding
Short Description
Magnesium transporter CorA-like family protein
Computational Description
Magnesium transporter CorA-like family protein; BEST Arabidopsis thaliana protein match is: magnesium transporter 7 (TAIR:AT5G09690.2); Has 549 Blast hits to 537 proteins in 115 species: Archae - 0; Bacteria - 0; Metazoa - 47; Fungi - 123; Plants - 353; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G09711.1

Model type
Protein coding
Computational Description
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G13330.1

Model type
Protein coding
Short Description
related to AP2 6l
Curator Summary
encodes a member of the ERF (ethylene response factor) subfamily B-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily.
Computational Description
related to AP2 6l (Rap2.6L); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT5G61890.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G13340.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G10890.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR