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Mutant Lines
52-0313-1

52-0313-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence
1. Chromosome: 5; Position: 648567 [Map]; Strand: w
  - AT5G02830.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
    Distance: -101; Region: promoter
  - AT5G02840.1 - [+] show detail - LHY/CCA1-like 1
    Distance: -137; Region: promoter
  - AT5G02840.3 - [+] show detail - LHY/CCA1-like 1
    Distance: -137; Region: promoter
  - AT5G02840.2 - [+] show detail - LHY/CCA1-like 1
    Distance: -139; Region: promoter
Flanking Genome Sequence: 52-0313-1 - 5-prime edge
```
ATCAAATGGA TTGGATTTGA AAGGCTATTT TTACAACTTC CAAACCGGAC 
CGGATTTGTA GTGTTAAAAT ACACCGGTAT ATATAAACCG ATTTGGTACT 
TTGATTTTAA ATTTTAAGAA ATAAAATAAG AAAAAGGAGA AAAATGGATG 
GCCTGAAATT GCNAGCGAAG CGTCTCCACA TATTATACAC CAACTTCTTG 
CCCGCCATGT GGATATCGTC GTCATTTCTC TCTCTAACCC CTTCTCTCTT 
CAGTCTCTCT CTCTCTAGAN NATCTCTATC TTGAATAAAA TACCGATAAT 
GACCTCAACC AATCCGGTGG TCGCCGAA
```

3 prime edge [+] show sequence

Chromosome: 5; Position: 648451 [Map]; Strand: w
- AT5G02830.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
  Distance: 0; Region: exon1 (5UTR)
- AT5G02840.1 - [+] show detail - LHY/CCA1-like 1
  Distance: -253; Region: promoter
- AT5G02840.3 - [+] show detail - LHY/CCA1-like 1
  Distance: -253; Region: promoter
- AT5G02840.2 - [+] show detail - LHY/CCA1-like 1
  Distance: -255; Region: promoter

CATTTGATTT ACATGAAATT AGAAAACCAG AAAAACTGAG CCACAATGAT 
GATACGATGA TGATCCTAAC CGTTGGCGAG GAATGAGAGA CTTTGTTATT 
GTCTTTGGCT CCTCCTCCGC CATAACCAAT CCTCACCATC ACCACCGTCG 
CTGTTACGCC ACAGCACCAG AGTCCAACCG GAAAACTAAA TCCAATTCTT 
CTTTCACCAA GCTACTTCCG TCACTACCGC AGCAACATTC ACCTTCTCCT 
GCTTCAGTCT CCGCGACTCA TTCTCTCTCT AGCCACTTCT CCAATGTCGT 
AAGATGGATT CCAGATGGCT CGCTTGAGTA TTACGCTGAT TTTGCCTCGA 
AGCTAGCTGA GGATGGTCGA ATTGAGGACG TCGCTCTCAT CGCCGAGACT 
TTGGCTGCAG AGTCCGGAGC TAATGTGGCT CGTTTCGCTT CCATGGTTGA 
TTATGATCTC TTATCGAAAG GGATTTCGTC GAATCTTCGA CAAGGTAAGA 
TTGAGAGCGT CGTTTACACT TTGAAGAGAA TTGAGAAGGT AGGAATTGCG 
CCATTGGACC TTGTCGATGA TTCGTCTGTG AAATTAATGA GGAAACAGTT 
TCGAGCAATG GCTAACTCTG TGCAAGTGGA GAAAGCTATT GATCTAATGG 
AGATACTTGC CGGTAAATAC TATATCAATT CTTGCTGGTA CACTGTGACT 
ATGAACTCTT GAATTGATTA CCTGCTTCTT ATTTCANGTC TCGGAT

AT5G02830.1

Model type: Protein coding
Short Description: Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description: Tetratricopeptide repeat (TPR)-like superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR-like) superfamily protein (TAIR:AT1G09900.1); Has 31969 Blast hits to 11487 proteins in 269 species: Archae - 3; Bacteria - 39; Metazoa - 341; Fungi - 298; Plants - 29991; Viruses - 0; Other Eukaryotes - 1297 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G02840.1

Model type: Protein coding
Short Description: LHY/CCA1-like 1
Curator Summary: CCA1 and LHY colocalize in the nucleus and form heterodimers in vivo. CCA1 and LHY function synergistically in regulating circadian rhythms of Arabidopsis.
Computational Description: LHY/CCA1-like 1 (LCL1); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT3G09600.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G02840.2

Model type: Protein coding
Short Description: LHY/CCA1-like 1
Curator Summary: CCA1 and LHY colocalize in the nucleus and form heterodimers in vivo. CCA1 and LHY function synergistically in regulating circadian rhythms of Arabidopsis.
Computational Description: LHY/CCA1-like 1 (LCL1); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT3G09600.2); Has 1339 Blast hits to 1329 proteins in 114 species: Archae - 0; Bacteria - 0; Metazoa - 92; Fungi - 0; Plants - 1059; Viruses - 0; Other Eukaryotes - 188 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G02840.3

Model type: Protein coding
Short Description: LHY/CCA1-like 1
Curator Summary: CCA1 and LHY colocalize in the nucleus and form heterodimers in vivo. CCA1 and LHY function synergistically in regulating circadian rhythms of Arabidopsis.
Computational Description: LHY/CCA1-like 1 (LCL1); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT3G09600.1); Has 1341 Blast hits to 1331 proteins in 115 species: Archae - 0; Bacteria - 0; Metazoa - 91; Fungi - 0; Plants - 1058; Viruses - 0; Other Eukaryotes - 192 (source: NCBI BLink).
Link: InterPro Scan - TAIR